BAC Information

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BAC

Clone NameMSMg01-089B12
Chromosome13 (Build37)
Map Location 119,943,922 - 119,944,234
singlet/doubletsinglet
Overlap genenone
Upstream geneMrps30, LOC668309, LOC100041278, Fgf10, LOC100041298
Downstream geneLOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089B12.T7 (MSMg01no089_b12.b1)MSMg01-089B12.TJ (MSMg01no089_b12.g1)
ACCAG307681AG307682
length687775
length of high quality
(start - end)
317 (44 - 360)116 (77 - 192)
definitionCHROMAT_FILE: MSMg01no089_b12.b1 PHD_FILE: MSMg01no089_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:47 2005CHROMAT_FILE: MSMg01no089_b12.g1 PHD_FILE: MSMg01no089_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGTGATACAGAAGACTGAGTTCAAAGGGAAAGAAAAACCTGATTT
ACTGAGATATATTGCATTTTCTGTACTAGAATTTTCATTTTCAATAGATT
ATTCAATCATCAAGGGTGGCTGAATAATAAGAAACTGTATTATGTATAAT
TTGACTCAATGATTCAATGAATAAATATATCTGTTACCGCTTGTGATGGT
TTGTGTATCCTTGGACCAGGGAGTGGCACCATCTGAAGGTGTGGCCTTGT
TGGAATAGGTGTGACCTGGTTGGAATGGGTGTGTCACTGTGGGTGTGGCC
ATGAATTTGATTGTGACCAACCGACAGGCATATAGGAGAGTTTTTTGGGG
GGCAAAGGGTAAATGACATAATTGTATTATAACCTCAAAAAAATAAGATA
GTATAAAAATGGATCCTAGCCATACCACACAATTTGATTGTCTTGGGAAA
AAAGAAGATGAAATAAAGCCTTTTGCTCTCTAGTTGATTTATTATGGCAT
TTTATCACAGCAATAGATCATACCTAAAATTGAAATTAGAACCAGAGAGC
GGATTATTACTGTGACAGACCTGGCCATTTTGTTTTAGGGGAAGATTATG
AGAAGTGTTTGGATCTCTGGGCTAGTAAAACCATTGA
CCCAATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTACCCAACACCAAGTGGTCAGC
CCCTGAATGTGTACATGTAAGCAACACTGAAAAAACTCTGGGTTGTATTC
ATGTACTCGTGTGTGTGTGTGTCGTGTGTGTGTGTGTGTGTGCGCCCCCC
CCAACCCNACCCTTCCCCCTCCCTTTCTCCTTCCTCTTTTTTTTCCCTTC
TCTCCTTTTCCCCCCCCACACTCTCTTCCCCCTTACCCTCTCCCCCCCCT
CCCTTTCCCCCCCCTCTCCTTCCCCCCTCCTCCTTCCCTTTTCTCCCCTT
CCCCCTCCCCCCCCCCCTTCCCCCTCCCTCTTCTCCCCCCCCCCCCCCCC
CCCTCTCTCCTCTCTCCCCCCCTTCCCCTCCTCCCCTCTCCCCCCCCCCC
CTCTTCCCCATCCCCTTCCCTTCCCTCCTCCTCTCCCTCCCCCCTCCCCC
CTCTCCCCCTCGTTTTTCCCCTTCTCCTCCCCCATTCCTTTTATCTCCCC
CCCCTTCACCCTACCCCTCCCCCCCCCCCCCCTTCCCCCCCCTTTCCCCC
CATTCCCTCATCCCCCTCATCCTTCCTCCTCCTCTCTTTCCTCTCCTCCC
CCCCCCCCTCCATTCTTCCCCCCCCCCCCCCTCCTACCCCTTCCCCCCTC
CCCCCTCTCCTCCCCCACCTCTCATCTCTCTTCCCCACTCCCCTCTTCCT
CCCCCCCCCATCCTCTCCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_b12.b1 MSMg01no089_b12.b1 CHROMAT_FILE:
MSMg01no089_b12.b1 PHD_FILE: MSMg01no089_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:47 2005
         (317 letters)



>mm_chr13_119943837_119944553
          Length = 717

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgtgatacagaagactgagttcaaagggaaagaaaaacctgatttactgaga 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaattcagtgtgaaaaagaagactgagttcaaagggaaagaaaaacctgatttactgaga 339

                                                                       
Query: 65  tatattgcattttctgtactagaattttcattttcaatagattattcaatcatcaagggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tatattgcattttctgtactagaattttcattttcaatagattattcaatcatcaagggt 279

                                                                       
Query: 125 ggctgaataataagaaactgtattatgtataatttgactcaatgattcaatgaataaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggctgaataataagaaactgtattatgtataatttgactcaatgattcaatgaataaata 219

                                                                       
Query: 185 tatctgttaccgcttgtgatggtttgtgtatccttggaccagggagtggcaccatctgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tatctgttaccgcttgtgatggtttgtgtatccttggaccagggagtggcaccatctgaa 159

                                                                       
Query: 245 ggtgtggccttgttggaataggtgtgacctggttggaatgggtgtgtcactgtgggtgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ggtgtggccttgttggaataggtgtgacctggttggaatgggtgtgtcactgtgggtgtg 99

                        
Query: 305 gccatgaatttga 317
           |||||||||||||
Sbjct: 98  gccatgaatttga 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)