BAC Information

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BAC

Clone NameMSMg01-089I16
Chromosome13 (Build37)
Map Location 7,465,651 - 7,465,929
singlet/doubletsinglet
Overlap genenone
Upstream genePitrm1, Pfkp, LOC100039532, LOC667611, EG623516
Downstream geneLOC791083, LOC382722, Adarb2, EG666941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089I16.T7 (MSMg01no089_i16.b1)MSMg01-089I16.TJ (MSMg01no089_i16.g1)
ACCAG308014AG308015
length670687
length of high quality
(start - end)
311 (6 - 316)285 (56 - 340)
definitionCHROMAT_FILE: MSMg01no089_i16.b1 PHD_FILE: MSMg01no089_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:23 2005CHROMAT_FILE: MSMg01no089_i16.g1 PHD_FILE: MSMg01no089_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGATCCGCGGAATTCCTCAGTGTGCAATGAGTTGGTCTTGTTCTAGTGC
CTTCTCGGGCTCCCCTCCTTCTGTTTGTCTTGTCCAATTCTGAGGTAATA
GTTGTATCCTATATTTTATCTTGTTATATTTTACTATTATCTGTTAGAAG
CCTGTAATTCTTTTAATGAGTGTCAGAAAGGTGTGGTTTGGATGGTAGGG
CCAGTGGAAAGGAACTGAAAGGATAGATGGAGGGAAACCTATTATCAAGA
AATGTTATATACCAGGGAAGAATCCATTTTCTTTTTTTAAAAGAGGGACA
CCTACCAGTAAAACTGATTCTTATTCCACTCCCGCCCCGCCAATGATGCT
TAATTAATTCTATAAAGTTTATCTCCCTATTGTCAAAATGTATGTGTCGC
AGTTGTACCATATTTTTTGAGGAGCACATTCATCTTCAGTCCACAATACT
TCGAGCACCACTCCTTTCTTACTACCCCTCTTCTCTGCCTTTTATTACCT
ATCGCTATTATTTTTCTTTTCATACTCCAATCCCTATTACCCTGCGTTCC
TTACTTTCCCCGTTCTATTCCCTATACTCTAGCCGTTATAATCCCTCACT
TCTTCGCTTGTTTCCCAACATTTTTCTGTTTTTCCCCTCTTCTAATCCTT
TTCCATTATCCACCCTCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATTCATATATACATACATACTATTTATACATAACAATATCATATG
AATATTTGATCTCTTGACTGAACATAAAAATACAACACACATGGGTGAAC
TAATTAATACATACATTAGTATTTTTTGTTAGCCACTTGGAAGTGATAAT
TTTAGTACTAACCTACCTTTGTGTAGATGCATGCATGTATGGATATACGT
ATATGTTTCTGTGTGAGAGAGCATGGGTGCATCAGTGTTGAGAGTAAGTA
CACATTTGTATAAATGTTCCTGTCCATGTGTAAACCTGCTTTTGTGTACT
ACACCCCTCACCCTTGTCAATGCCTGTACTTAGGGGTTGTGTGCATATAC
GCGCAAGTGTGTTTGCATATGCATGTGCATCTTGCTTTTTCCTTATGTTA
ATGTACATTTCAGCATAATTGTAACGTATGAGTTTCTACAGCCTGAATTC
TTTTCTTTCTGTATTTCCCAACCTGAGAACCTCGGAGGTTATACTTGTAC
CATCCCCCACATGACTATGATTCTTCTCATCGATTCCATTTTTATATCTC
CCTCCCTCCCCGAACAGATATCACTGCCGGTATTTTTCTTCGCGCTTGCT
CCGTTCTTTTCCCCCCACTTTTACATTTTTGCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_i16.g1 MSMg01no089_i16.g1 CHROMAT_FILE:
MSMg01no089_i16.g1 PHD_FILE: MSMg01no089_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:23 2005
         (285 letters)



>mm_chr13_7465448_7466130
          Length = 683

 Score =  485 bits (251), Expect = e-142
 Identities = 273/281 (97%), Gaps = 2/281 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   catatatacatacatactatttatacataacaatatcatatgaatatttgatctcttgac 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 catatatacatacgtactatttatacataacaatatcatatgaatatttgatctcttgac 263

                                                                       
Query: 64  tgaacataaaaatacaacacacatgggtgaactaattaatacatacattagtattttttg 123
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaacataaaaatacaacacacatgagtgaactaattaatacatacattagtattttttg 323

                                                                       
Query: 124 ttagccacttggaagtgataattttagtactaacctacctttgtgtagatgcatgcatgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 ttagccacttggaagtgataattttagtactaacctacctttgtgtatatgcatgcatgt 383

                                                                       
Query: 184 atggatatacgtatatgtttctgtgtgagagagcatgggtgcatcagtgttgagagtaag 243
           ||| ||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgcatatatgtat--gtttctgtgtgagagagcatgggtgcatcagtgttgagagtaag 441

                                                    
Query: 244 tacacatttgtataaatgttcctgtccatgtgtaaacctgc 284
           |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 442 tacacatttgtataaatgctcctgtccatgtgtaaacctgc 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 683
Length adjustment: 9
Effective length of query: 276
Effective length of database: 674
Effective search space:   186024
Effective search space used:   186024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)