BAC Information

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BAC

Clone NameMSMg01-090E03
Chromosome13 (Build37)
Map Location 70,522,925 - 70,523,213
singlet/doubletsinglet
Overlap genenone
Upstream genePols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik
Downstream geneEG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090E03.T7 (MSMg01no090_e03.b1)MSMg01-090E03.TJ (MSMg01no090_e03.g1)
ACCAG308537AG308538
length783661
length of high quality
(start - end)
325 (103 - 427)289 (20 - 308)
definitionCHROMAT_FILE: MSMg01no090_e03.b1 PHD_FILE: MSMg01no090_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:22 2005CHROMAT_FILE: MSMg01no090_e03.g1 PHD_FILE: MSMg01no090_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCCCCCCCCCCCCCCCCCCNCCCNNNNNNNNNNCNNCTATCCC
NCNNNCTGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGTCCTGGCCCCCAATCAAAAATGTAGCTAATGAAGCT
TCATGACACCCAAGTCAGAAGCCCAAAAGCAACTTTTAAAGTCAGACATC
CTCACACAATGGAAACCCATGGTCTACGAACCTGACGCTTGCATGAGGCT
TGATGAAATAAAATTACTAAGAGTCTTTGTTTTCCATAATTAAGTTTAGA
TTTCTAGGAGAAGAAAATGTCTCATGTGCAATATCAATTCTGGGCTGAAG
AGTTTCAGGCAACATCTGCTGCTGTTGTGTGGCGGGGGATGTGCTCAGTG
CCAAGTGCTCCTGCCCCTGTGTTCACAACACCCCTGAAGTGAAGTCACAT
GATGAAAGACCTTGGATTCTTTGCTTGTTTGGATTTTACTTAGTTTTGAT
CATTGAGTGCTTACAAACCTTTAAGCAGTGTTACATTTTTCAAAAGCTCC
ATATTTATTACAACCACAGTTTATATAGCAGGTCCTTAAAACATGACATA
ACCATTTGGCACAATGGAAATAATAGCATAAATTCTTCTAATCTGAACGT
GTGACTGGCTTCTTGATGCCTTGTATCTCTTTCTTCAAACATTTCACTTC
ATCATACATAATTCTTACATATTTCACATCTTTTATATTTCTTTCCCCCT
AGAATGGCTGAATCAACCGACCGATGATATCCT
AGACCTATCGAAGATCCGCGGAATTCTGGAGGAACTCTGCTTTTGGAAGC
CTTGCTAACTAGAACAGTTGTTTTTGCAGGAATGCAGGCAGAATAGTTCG
TAGAACTAGAACCCCAGAGCCCCTCTGGTGGGATGCAATGTTCTCTACCT
TGACAGGGTTTTGATAACACAGGTGTGTGCAGCCATCACATTCACTGGCT
GTGTACTTGAGCTTTGTGTTACTTCATTGTGCATAAAATTTACATTAAAA
GCAAATGCATGCACATATATTGAAATGTTTTTTACTGGGAGTGTGCTGAT
GTGCCAGTGTGTTTTGAAACCCCCCCCCCTGTTGGATGATGGCTGGAGGA
ATAAACCATGGTTTGATATGTGGAAAAACAGATATAATAAAATGTATAAT
TACGGCCTAGGTAGTTGGCTTATAACTATATGAAGTATAATTCAAACTTG
CTCTTTGTTTGTCAATTCTTGCAACACAATTTATGGAATTAAATCCCCAG
TATCCCCCTCCATCGGATTTGACATCTTTGATGTCATTCTTTACTTTTCC
TTAAATCCTGGTGCACGGTGCCTGAACTACCTCAAAACCCACAATATGAA
TCCTCCCCCACGCGAGCCTTATAGACTTCACAGTTAATTTCTCAACCCTC
CCAGGGTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_e03.g1 MSMg01no090_e03.g1 CHROMAT_FILE:
MSMg01no090_e03.g1 PHD_FILE: MSMg01no090_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:22 2005
         (289 letters)



>mm_chr13_70522724_70523413
          Length = 690

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%), Gaps = 1/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattctggagga-actctgcttttggaagccttgctaactagaacagttgtttttgcag 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaattctggaggacactctgcttttggaagccttgctaactagaacagttgtttttgcag 431

                                                                       
Query: 61  gaatgcaggcagaatagttcgtagaactagaaccccagagcccctctggtgggatgcaat 120
           |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 430 gaatgcaggcagaatagttcatagaagtagaaccccagagcccctctggtaggatgcaat 371

                                                                       
Query: 121 gttctctaccttgacagggttttgataacacaggtgtgtgcagccatcacattcactggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gttctctaccttgacagggttttgataacacaggtgtgtgcagccatcacattcactggc 311

                                                                       
Query: 181 tgtgtacttgagctttgtgttacttcattgtgcataaaatttacattaaaagcaaatgca 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgtgtacttgagctttgtgttatttcattgtgcataaaatttacattaaaagcaaatgca 251

                                                            
Query: 241 tgcacatatattgaaatgttttttactgggagtgtgctgatgtgccagt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgcacatatattgaaatgttttttactgggagtgtgctgatgtgccagt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)