BAC Information

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BAC

Clone NameMSMg01-091E07
Chromosome13 (Build37)
Map Location 27,698,573 - 27,698,947
singlet/doubletsinglet
Overlap genePrl7b1
Upstream geneLOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1
Downstream genePrl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091E07.T7 (MSMg01no091_e07.b1)MSMg01-091E07.TJ (MSMg01no091_e07.g1)
ACCAG309265AG309266
length690697
length of high quality
(start - end)
475 (78 - 552)375 (131 - 505)
definitionCHROMAT_FILE: MSMg01no091_e07.b1 PHD_FILE: MSMg01no091_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:43 2005CHROMAT_FILE: MSMg01no091_e07.g1 PHD_FILE: MSMg01no091_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCTAATGTACTCCAAATTAGGCCCGAGCTCACTTCATGGTGTCTC
TACCTTGGTAATGGGAGACCCCAGCAGGCTTGACTTCTGCAGAATAAAAC
ATTCTTTGTGTTTACATAGTATTTTAATCTGGGCTATCAGTCTTCAGCAA
ATCATGGACCCTTGTGATATGTCCCTAACCTTTCTGGTTTCTCCAAGTCT
TCCTCCCCATCCTTTTAAGGTCTCCCCAAGCTCTGGCTATGGGAGAGTAT
CTGCTCCCATCAGTTTCAGGAAGAAGTCTCTTTGATGAAAATTGTATTAG
GCTTTGGTCTCAGCACAAACTATAAGCCAAAAGTATTTTGATCATGTTTA
TGTCCAATCACTCCACTTGAGGTCTTGCCTGGTTACAGAAGATGGCAAGT
TTAGGCTCCATTTTCTCCATTACTGAATGTATTTATTAAGGTTATTCCCT
TAGATTCCATTGAGACTTCCTTTCAATAGATTTCTACCTCACCTCCGAAA
TGCCCCTCAACTCTAGTAATTTCTCTTAGTATTTTCTCCCTCCCACCCAA
ACTTGGGGATCCCAGCTTGGTCTTGCTGGGTTCATAGTGACATGGTTCCT
GCCCTTTGAACAGGTCCCCAATGTGAAACTTTGCAAGAAT
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGAAACAACATTTGAGAAAAGT
GTTTTTATTTTTAATAAAGTCTTTTGCCGTGAATCTGTAAGAAATCAGGA
CTGCTCCATCCTCCTTGTGCTGCTTCACAGAAGTCAGAGCTTTATTTGAT
ATGTGAAGGTGAGTTACCTGAAATTTGATGTATGGTGACTTCTATTAAAC
TATGGCACACTTCCAGTTCTCACACAGACATTCACTGTTGAACAATGCCT
GAAGCCTCTGAGGTACTTACAAATATCCTGCGTGTCTCTATAGCAAGGCT
ATTGATGTGCTGAGACAGTATGATGGCATCATCAAAAAGGTCTTCGGTGA
GCATTTCGCTAACACCTGATCCACTGCCAATTGTGGGTACAGAGACCACG
TCCTCCCACAGGAGAAGATTTGACATCAACAGTATCTGCAGTGCCCCTGA
TACAGAGAAACAACTGTTCTGTGATCCATTCATCTGAGGTTATCAACACT
ATCTCTGCCTAGCATCTTCCACTGTATTGTTTGGGCCCCTCTGTGATTCT
ATGATAGAATGCAACTGTATTTTACAGTTGATAAAGTAATTTATAATTAC
CTCGTTGCCCCACTTATATAGCCTTAAAAGTTTGGTAATTTTCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_e07.g1 MSMg01no091_e07.g1 CHROMAT_FILE:
MSMg01no091_e07.g1 PHD_FILE: MSMg01no091_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:43 2005
         (375 letters)



>mm_chr13_27698373_27699147
          Length = 775

 Score =  717 bits (371), Expect = 0.0
 Identities = 374/375 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatctgtaagaaatcaggactgctccatcctccttgtgctgcttcacagaagtcagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatctgtaagaaatcaggactgctccatcctccttgtgctgcttcacagaagtcagagc 260

                                                                       
Query: 61  tttatttgatatgtgaaggtgagttacctgaaatttgatgtatggtgacttctattaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatttgatatgtgaaggtgagttacctgaaatttgatgtatggtgacttctattaaac 320

                                                                       
Query: 121 tatggcacacttccagttctcacacagacattcactgttgaacaatgcctgaagcctctg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatggcacactttcagttctcacacagacattcactgttgaacaatgcctgaagcctctg 380

                                                                       
Query: 181 aggtacttacaaatatcctgcgtgtctctatagcaaggctattgatgtgctgagacagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtacttacaaatatcctgcgtgtctctatagcaaggctattgatgtgctgagacagta 440

                                                                       
Query: 241 tgatggcatcatcaaaaaggtcttcggtgagcatttcgctaacacctgatccactgccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatggcatcatcaaaaaggtcttcggtgagcatttcgctaacacctgatccactgccaa 500

                                                                       
Query: 301 ttgtgggtacagagaccacgtcctcccacaggagaagatttgacatcaacagtatctgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgggtacagagaccacgtcctcccacaggagaagatttgacatcaacagtatctgca 560

                          
Query: 361 gtgcccctgatacag 375
           |||||||||||||||
Sbjct: 561 gtgcccctgatacag 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)