BAC Information

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BAC

Clone NameMSMg01-096I19
Chromosome13 (Build37)
Map Location 70,864,581 - 70,864,760
singlet/doubletsinglet
Overlap genenone
Upstream gene3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473
Downstream geneAdamts16, 8030423J24Rik, LOC627230, LOC100042360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096I19.T7 (MSMg01no096_i19.b1)MSMg01-096I19.TJ (MSMg01no096_i19.g1)
ACCAG313200AG313201
length756830
length of high quality
(start - end)
184 (187 - 370)---
definitionCHROMAT_FILE: MSMg01no096_i19.b1 PHD_FILE: MSMg01no096_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:56 2005CHROMAT_FILE: MSMg01no096_i19.g1 PHD_FILE: MSMg01no096_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTCTTTTTTTATTTNTCTCACTAATTCCATATCACCTCTCTCAAACAC
TCTCTTCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAGTAG
GGCGGNAATCAGTGGGATTATCAGAATGCACTGGATAATGAAGTGTTTCC
CAGGCTAGCAGTCTTTAACATGCAAAAGTGATTTCAACCAGGAAGCAGAA
GCCCAGCCCTGTCATCAGCCATGGCAGTCACGAGCCTCTGTCTTGTGTCC
TTACACATATTTTCATTCCACTCTGTGTGGTCCTTCCTCTTGGTGCATAC
TCCTGTCACCACAATGGTCTAGCCTCTTTGTCTCTGGGACAGTCATTCTC
CATCTGTAATTCTCAGCAAGGCCCCAATATCTGAGTATCTTCAGATACCA
CTTCACAAGAAGGACCTACTGTTACACCACACACACACACACATACACAC
ACTTCATCTGACACTCCCACATCTTCTCTCTTTAATGAGATAAATCTGGA
TTTCCTTAAAGGCAAGTGTTGAACCCGCTGATGTACCTGGACCTTACCAT
ATTCTCACTCTAGTGTTTCGAATCTTCTGGTTCTCTTATACCTCCTTCCT
GACTGGAGGACTCTTCTTATCCATTCTCAATTGTGTGACCTTGACATACC
TTTTTGTATCTCTGCTCCCATTCCTAGGTTTCCAATGTTACTTACCATTT
ATTCCTACGTTTTTTTTCCTATGTTTTTGCCGCCTGTCTATGCCCCCGTC
CCCTCA
ACACACATAACTAACCTACCCACTATTTATAAAACAACCGACTCCTCCGC
TACCTTCTCACGATGATACGGGAAGGNCGGGNNGGAGNNGGGAAATCCTT
ATTAGANNNNNNNNNNNNNGGNGTTGCCGAAAAAAGAGGGGNNNNGNNNN
NGNNNNNNGNNGNNGGNNGANNNNANNNANNNGGGCCCCGCGCNCCGACG
ACGAAGGAGGGGCGGCCAAAGAACACGAAGAAGGCAAGGCCGAGGCACAA
AAACAGCAGCGGAGAACAGCCGGCGGAGAAGGGAAGGAAAGGGGGGCCCA
GGGCACACAGCCAGGCACTTTGAAGGGGCGGACAGGACGCAGAACGGCGG
AACAAGGAAGGGCCAGCGCCACACCACAAACATTTGTTTTTTATCCGCCA
CAAGAAAGCCGCCGCCACAACAAAGAAGTCCCCCCCCCCGCCCGCGAAGA
AGAAACCACGACCGCGACCGAACAGGAGCAGGCCCCAACGAGAGAGAAGA
GAAGCGCCGAGGGAGCGGCAGCGGCAGGGACGGAGGAGCCCACCGCAGGC
CCCCAGGCGGGGGCCCACGGCGCGGAGGGCGGGAGCGAGGAGGGACCGCC
GGGCGCCCGGACAGAGGGGAGGCGGCCCGGGCCGGGGACGGGGCGGAGAG
GCGGGGGGGGGGACCGGACGGCCCACAGGCGCCGCGCCGCGGACCGCCCG
GGCCAGCCACGCAGGAGCCGCCCGGGAAGCCGCGGCGACCAGGGGGCGGC
GGGAGCCGCGGACGAAGGGGCCAGTGTTTGAGAGCCAGGCGCGAGGCGCG
CCCCGTTGGTGGTGGTTGTATTGCACTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_i19.b1 MSMg01no096_i19.b1 CHROMAT_FILE:
MSMg01no096_i19.b1 PHD_FILE: MSMg01no096_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:56 2005
         (184 letters)



>mm_chr13_70864381_70864964
          Length = 584

 Score =  325 bits (168), Expect = 1e-93
 Identities = 177/180 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggaagcagaagcccagccctgtcatcagccatggcagtcacgagcctctgtcttgt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 accaggaagcagaagcccagccctgtcagcagccatggcagtcacgagcctctgtcttgt 321

                                                                       
Query: 61  gtccttacacatattttcattccactctgtgtggtccttcctcttggtgcatactcctgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 320 gtccttacacatattttcattccactctgtgtggtccttcctcttggtacatactcctgt 261

                                                                       
Query: 121 caccacaatggtctagcctctttgtctctgggacagtcattctccatctgtaattctcag 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 260 caccacaatggtctagcctctttgtctctgggccagtcattctccatctgtaattctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)