Query= MSMg01no097_g03.b1 MSMg01no097_g03.b1 CHROMAT_FILE:
MSMg01no097_g03.b1 PHD_FILE: MSMg01no097_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:06 2005
(194 letters)
>mm_chr13_56332552_56333145
Length = 594
Score = 366 bits (189), Expect = e-106
Identities = 192/193 (99%)
Strand = Plus / Plus
Query: 1 aaaccacttcttcctgctttttgttaatcattagagctaagtctcaccctagatccaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccacttcttcctgctttttgttaatcattagagctaagtctcaccctagatccaggc 260
Query: 61 tgatctcagcctcagagcctttgttaagtcctcagagatcccacggtcaatcaagggcac 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tgatctcagcctcagagcctttgttaagtcctcagagatcccatggtcaatcaagggcac 320
Query: 121 acttactgtgccaaggtaaaggatgtggctgtcacctaatgaggtcaccatagaacaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttactgtgccaaggtaaaggatgtggctgtcacctaatgaggtcaccatagaacaaaa 380
Query: 181 ccatgacagccac 193
|||||||||||||
Sbjct: 381 ccatgacagccac 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space: 108996
Effective search space used: 108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no097_g03.g1 MSMg01no097_g03.g1 CHROMAT_FILE:
MSMg01no097_g03.g1 PHD_FILE: MSMg01no097_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:06 2005
(402 letters)
>mm_chr13_56477523_56478324
Length = 802
Score = 704 bits (364), Expect = 0.0
Identities = 395/410 (96%), Gaps = 8/410 (1%)
Strand = Plus / Minus
Query: 1 caggtggtgctggatgtgacctgaccaggggaaaggaaatctaacc--------agctac 52
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 656 caggtggtgctggatgtgacctgaccaggggaaaggaaatctaaccaggctactagctac 597
Query: 53 atgatttttcctggcagggcaaaggtgggagtgcaggactatctaacatgcaggtccaga 112
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 atgatatttcctggcagggcaaaggtgggagtgcaggactatctaacatgcaggtccaga 537
Query: 113 gcaggggagggagtgggcccactcctacctctcccaagatgagatttctggggttggaca 172
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gcaggagagggagtgggcccactcctacctctcccaagatgagatttctggggttggaca 477
Query: 173 tgactttaccatgttcccgctgtggacctgctcctcctggttccacagtttcctgggccc 232
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgactctaccatgttcccactgtggacctgctcctcctggttccacagtttcctgggccc 417
Query: 233 acaagccataaaacggctaactagttatcacaactaatcatgttagcaacctagataggt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 416 acaagccataaaacggctaactagttatcacaactaatcatgttagcaacctagacaggt 357
Query: 293 tgcacctcactatgagatcatgggtagaattatatgtttcatatgaaagactgtgtcaag 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgcacctcactatgagatcatgggtagaattatatgtttcatatgaaagactgtgtcaag 297
Query: 353 gcaaacgttgcttagatgccgtccatagtcccattcttcagactgagtaa 402
||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 296 gcaaatgttgcttagatgctgtccatagtcccattcttcagactgagtaa 247
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
