BAC Information

Click to search

BAC

Clone NameMSMg01-097I02
Chromosome13 (Build37)
Map Location 9,317,882 - 9,318,051
singlet/doubletsinglet
Overlap geneDip2c
Upstream geneAdarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719
Downstream geneLOC666986, Zmynd11, Chrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097I02.T7 (MSMg01no097_i02.b1)MSMg01-097I02.TJ (MSMg01no097_i02.g1)
ACCAG313918AG313919
length679729
length of high quality
(start - end)
170 (51 - 220)72 (56 - 127)
definitionCHROMAT_FILE: MSMg01no097_i02.b1 PHD_FILE: MSMg01no097_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:16 2005CHROMAT_FILE: MSMg01no097_i02.g1 PHD_FILE: MSMg01no097_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACAAATTCCAGAGAGAGCGCGGAATTCACCTTTATCCCAAATTAGAGAG
TAAGCCATTAGTGTTCTTTTTTTATAGTCTAAGTCTAAACTAGGCCACTC
TGTGACCATGGCCAAGACAGTATTAACCTTTTCCTATACTTCAGACATCA
TCAAGTACACAGCAAAGCCAGTTAAGGACTCTAAGGCGTGCAGGAAACTT
TGGCTACAAAGTTTTGGCTACCAAACAAATGCCGAATAACTTGTGTGGCA
TTGCTTCCGGGTCTGGATCACTCCTTACCACTCCTTATTGTCACTGTATT
TCTGGGCCTTTGCTCATTATTTGATATTAGCTACATGGAAGACGGCATTA
CCTCCCACCAGATCACCTCAGAAAGATGACTTCAATAACAACCCTTCCCT
CTTGCAGCTGATCAACTGCTGTTTCTTTCAGTCAATAAGGATAAAAAGCA
GCTCCAAAAGCTAACTTGATTCTCTATTAACCAATCAAAACTACTGCTAG
TCACTCTCACTGCCTATATCACTGTTAGAATATACAGGCATAACCATGTA
TTGAAACTGACAAATAGTTTCATACCCCTTCCATCATAAAAAAAAGGCAA
GAAACTTAAGAGTAACCTAACACCTGTACTCGATGACCGACAAAACTCTA
TATTTTATGTACCAAAAAGTTATTTACCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTAAATTTGGGTTCTTTGCTGGTTTTTTGGGTTTTTTTGGTTTGG
TTCGGTTTGGTTTTTGGTTTTTTTTTGAGACAGGGCACCCACCCGCGTGA
AAATCTGAATATTCTCATTATCACTCTGGCCCCCATATCCAAACACCACC
GCCCATACCAAAGTCGGCCCAACCACGCCAGGGGGGGCACATTAACATTC
CTCTTCCCTAATCTCAACTCCCCCATACCTTTCTTATCATTCCTCCCGAA
AATTTTTTTTTTTTTCGTAACTTGAAGCACCCTATAGGGGACGGAAGTTT
TATTTTCCCCCACCCGAAACTGTAGATAGAAACCATCAACGGAGCGTAAT
CAACCCCGCGTAGGAACCCACCCTTCCCCCCCCCCTAGTACTCCGTCGCG
TATAGAGGCCATTAACAACACCGATACCACCTCCCCATAGTGAATCATCC
CGAACAATTTTTTTAGAAAGCGGGGAGGATCACCATTATAGAGAGATTGT
AAACCACAAGTCCTGCATTAAATTCTACCTATCAACATAAAGTCCACCGG
GGACGATACCATTTAGCAACAAAAGCGGCCAACCATACCGGTGAATCGAC
ATCCCCCAAAAAGACACGGTAATTGTAATACTCACGCCTATTTACAAATA
AGGGGATACCCATTTCATTTGCGGCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_i02.b1 MSMg01no097_i02.b1 CHROMAT_FILE:
MSMg01no097_i02.b1 PHD_FILE: MSMg01no097_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:16 2005
         (170 letters)



>mm_chr13_9317682_9318251
          Length = 570

 Score =  298 bits (154), Expect = 1e-85
 Identities = 166/170 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagccattagtgttctttttttatagtctaagtctaaactaggccactctgtgaccatg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 370 taagccattagtgttctttttttatagtctaagtctaaactaggtcactctgtgaccatg 311

                                                                       
Query: 61  gccaagacagtattaaccttttcctatacttcagacatcatcaagtacacagcaaagcca 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gccaagacagtagtaaccttttcctatacttcagacatcatcaagtacacagcaaagcca 251

                                                             
Query: 121 gttaaggactctaaggcgtgcaggaaactttggctacaaagttttggcta 170
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 250 gttaaggactctaaggcgtgcagaaaactttggttacaaagttttggcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)