BAC Information

Click to search

BAC

Clone NameMSMg01-099L23
Chromosome13 (Build37)
Map Location 70,785,158 - 70,785,263
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507
Downstream geneEG620473, Adamts16, 8030423J24Rik, LOC627230, LOC100042360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099L23.T7 (MSMg01no099_l23.b1)MSMg01-099L23.TJ (MSMg01no099_l23.g1)
ACCAG315612AG315613
length7131,669
length of high quality
(start - end)
106 (70 - 175)---
definitionCHROMAT_FILE: MSMg01no099_l23.b1 PHD_FILE: MSMg01no099_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:22 2005CHROMAT_FILE: MSMg01no099_l23.g1 PHD_FILE: MSMg01no099_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAGCCGCGGA
ATTCTCTCTATTCTCCCGCTTGAGGGTCTAGCTGGGATGGGCTAGGGGCC
AGAAGGCTTACCTTTTCTCCAGTAGGATCCGGTATTTTCCAGCTGGCTGG
CACTCCTCCAGGACTGGACAAGGAGAGGAGGAAGCAGTGAAAGAAATGTC
TACCACACACGGCTCCTTCAGCTGTGACATGCATTTGTGAGGCCAGAGTG
GCCTTCCTCTCACGCGCCACAAGGGTGTGAATAAATAGACACCTTCATAA
ATGCAACCTGCTCAGTCTGTACTGAGCTACTCGTATGCATGCTTTCGGGG
CTGACGACTGTTTGACGGCGCTCTCCCCCGGGGAAGACCACTTCTCCTGC
TCTCAGCATTTCTTGGCTGCCTAAAGAGTCCTCTGCGTAGGGCTGAGGTC
TCACAAGCTTTCCCCAGTTCACACCACCATGTGCCCTGATGTCAGTTTTA
TTCTGGTCATCGCTAGGCCACCACATTATTAAGCCCTCATGGAATTAGCT
TCTCTGACACTTCTACTATACACAACCTCCCAGCTTACCTCCTTGTGCCT
TCTTGCCATTCTTTCTGCCTCCCAGCTTCCCTTATGGGCATCCGTTCTGC
GCGCACCACTTGCCTCTGCAGTTTGAGCCTCCACAACCTCCTGCCCTCTT
GGCTTTAACTTGT
CGCGCTCTCCCTGCCCGGTGTCGCGCGCCTTCCGTTTGGCGCCCTGCGTT
CTTGTCTTTTCTTTCTCCCGTTTTCTTCGCGCTTGTTACGTTCGCGCGTT
ATATGTATTACGCGTTGTTCCGCCAACAGCTTCTTCTCTATAACTCGTAG
TGCGTGGAATTGTATTTATACGCGGGCGCGTAGAAGAAGAGAATGCTTGT
TGCAGATTATAAACTAAATGTTGTCGCGCGGGGTTATACCGCGTCTATAT
TCACGAGCTCGAACGTATCTGGTAGGGTCAGCTGCGGCGATACTTCGCTT
CGCGCCGGTGTGTCATCGGTCTTGATTATCCGCAACACTCTCCCTACCGC
TTTTCCGTTCGTGTCCGCACCAGATTATCTACCTCTCTCGCGTTCGTTTC
CTCTTCTCTCCGCAAGTTCTTCACGACCTCGTATAACAACGAAGCATAAG
CGCATATCGCCCGCGTATNATTATTCGTGGGTGTGCCGCCGCGTCGCTCC
GCCGCGCTATATATTTATTTAGTATTTATCCTCGCCGGCACGATACACTA
CATTTATATTACTCTTGATCATTATACACGCACTATTTATAATTTATACA
CTTCGCCGCCGTCGGCCTCTCCTTCTTCTTATCGATATTATATACTTTCA
CACGTCGCACCCACTACTATCTATCTGTCTCGCGTATTCGATATATATAT
ATAATATAATTAAACGGCACTATACGCGCGACTTAAATCTGTCATCCGAT
GCATGCATATACGTAGTTGTGCAATAAGTTGATCATATNATATCCCTTAT
GCGACCCAGTTCGTGTGATATCTATGTCATCTCCATGTACAATGCGCACG
CTTATTTATATATTCTCCTTCGTCATAATAACCAACCGACGGTAGCTAGT
CGCGTGTGCGAACCCGATGCAGCGACCGTTGCTTGATCGCTCCCTCTCAA
CTCACACCGTGTGTGCTATCTGATCCGTCATCGTACGCGCGTGTAGATCG
CGACAGACGCTAGGGTCTCGTATATTTATACCATTGCGCGNTCGCATCTG
TANTTATATCACCTCATATATATCACTATCTCCTCACACGCTCACTTATT
TTATATGCTACGCCGCGGCGGACCGACATGACTGCACTATAATATAATAT
CGCGCGCCGCTCTCATGTCCGCGCACGCCTTCCACGATTCTATATATCTA
CTACGCGCGTACGACATCTACATCACACGATGTATAACTCGCTTTATATC
GTCGTCGCGCGTCACCCAATCTNTCATATATCACTCGACGACACCACTCT
ATGATACTATCGCTCTCCGTCCACACTTCGCTCGTGATGACTGATATACN
CGAGCGTAATTGATTNCATATNACACTTACAGAGCGCTCATTATATCTCT
TGAACACATCAGTTATATCATCTCTAGTAATCTCACACGCACGCTATATC
TCTCCGCCGCAGCGCACACTATCTGCTTCATCCTCGTTTATATCATTTAC
TTTTATATATTAGTCCGCGTCGCGCANATATATATATCTCTATACGACAC
TGCACTCGCCGCGCTATTNACTATACTACTGTGATGCACCCGCGTCGCGC
GCTCTNCATCCGTCACANATGTATTNTGATANTCGGCGANCGAACGCGGA
CATGCCGTCTATCATCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_l23.b1 MSMg01no099_l23.b1 CHROMAT_FILE:
MSMg01no099_l23.b1 PHD_FILE: MSMg01no099_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:22 2005
         (106 letters)



>mm_chr13_70784958_70785463
          Length = 506

 Score =  174 bits (90), Expect = 1e-48
 Identities = 102/106 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagggtctagctgggatgggctaggggccagaaggcttaccttttctccagtaggatc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 306 ttgagggtctagctgggatgggctaggggccagaaggcttacctttcctccagtaggatc 247

                                                         
Query: 61  cggtattttccagctggctggcactcctccaggactggacaaggag 106
           ||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct: 246 cggtattatccggctggctggcattcctccaggactggacaaggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)