Query= MSMg01no099_l24.b1 MSMg01no099_l24.b1 CHROMAT_FILE:
MSMg01no099_l24.b1 PHD_FILE: MSMg01no099_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:22 2005
(639 letters)
>mm_chr6_45398529_45399566
Length = 1038
Score = 1087 bits (562), Expect = 0.0
Identities = 618/642 (96%), Gaps = 13/642 (2%)
Strand = Plus / Plus
Query: 4 ggaattcatagtct-----attcccccttagtagatagcagatttatccagtgcactata 58
|||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 204 ggaattcatagtctaaggaa-----ccttagtagatagcagatttacccagtgcactata 258
Query: 59 ttcttgctggattttactcatgcaagagaaaagctacactaagtgcttgggttctgtcca 118
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tacttgctggatgctactcatgcaagagaaaagctacactaagtgcttgggttctgtcca 318
Query: 119 cacaagaccaagcactttaaataagactaccatgcctctagcatagagagtggaaccaac 178
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 319 cacaagaccaagcactttaaataagactaccatgcctctagcatggagagtggaaccaac 378
Query: 179 ggtagaatgccacattagagagaagttctattgaagactaggtatgtttcccacatgaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggtagaatgccacattagagagaagttctattgaagactaggtatgtttcccacatgaag 438
Query: 239 cagggccacttctccccccactaatgttgatatgttctgcacacaagacagagtactcac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagggccacttctccccccactaatgttgatatgttctgcacacaagacagagtactcac 498
Query: 299 ccaaatctggaatgttcttgctatgaggcagagacccactctatttggcataggatgttc 358
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 499 ccaaatctggaatgttcttgctatgaggcagagacccaccctatttgggataggatgttc 558
Query: 359 tttacattaaaatagagccccaaatattccttcatgtcaacatgtcttacttcactgtca 418
|||||| ||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 559 tttacactaaaaca-agccccaaatattccttcatgtcaacatgtcttacttcattgtca 617
Query: 419 aaatctatattgctaaaaaa-ggatgttcctcttttcataataataaaattttttgtaag 477
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 618 aaatctatattgctaaaaaaaggatgttcctcttttcataataataaaattttt-gtaag 676
Query: 478 gaagtagatatgagtgctataggagaatcatggtaaccatatgtgaagtgtgtgtatttt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaagtagatatgagtgctataggagaatcatggtaaccatatgtgaagtgtgtgtatttt 736
Query: 538 ttcattttcttatatatagatgataaattaaaacaattcatatttaatgtattcaacttg 597
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttcattttcttatatatagatgacaaattaaaacaattcatatttaatgtattcaacttg 796
Query: 598 agtgtggaaacaatgtatctatgctactacctccactatctt 639
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 agtgtggaaacaatgtatctatgctactacctccactatctt 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space: 646612
Effective search space used: 646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_l24.g1 MSMg01no099_l24.g1 CHROMAT_FILE:
MSMg01no099_l24.g1 PHD_FILE: MSMg01no099_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:22 2005
(319 letters)
>mm_chr13_82493069_82493787
Length = 719
Score = 569 bits (294), Expect = e-166
Identities = 312/318 (98%)
Strand = Plus / Plus
Query: 1 caatttatattctaccactcaatttctttacgaagcttttttgaacctttgtggtatatc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 caatttatattctaccactcaatttctttacaaagcttttttgaacctttgtggtatatc 260
Query: 61 tcatcagaaacctagtacctaaatataactttcccctgtgaagggatgactctttttctc 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaacagaaacctagtacctaaatataactttcccctgtgaagggatgactctttttctc 320
Query: 121 tttgtctgattacgcatatattttataatgtatcatttgaagtctagctgtttgagcaca 180
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tttgtctgattaggcatatattttataatgtagcatttgaagtctagctgtttgagcacg 380
Query: 181 tgtgagtctttcatctcctcggactctctatttccaaataatttctttctttattcggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tgtgagtctttcatctcctcggactctctatttccaaataatttctttctttatttggat 440
Query: 241 taaatgtacatttgcctggatggcaaactgaatgactcagaacagcatccttcttgattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatgtacatttgcctggatggcaaactgaatgactcagaacagcatccttcttgattg 500
Query: 301 ctacataagaatgcatta 318
||||||||||||||||||
Sbjct: 501 ctacataagaatgcatta 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
