BAC Information

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BAC

Clone NameMSMg01-099P01
Chromosome13 (Build37)
Map Location 40,178,062 - 40,178,609
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099P01.T7 (MSMg01no099_p01.b1)MSMg01-099P01.TJ (MSMg01no099_p01.g1)
ACCAG315760AG315761
length748702
length of high quality
(start - end)
90 (35 - 124)547 (77 - 623)
definitionCHROMAT_FILE: MSMg01no099_p01.b1 PHD_FILE: MSMg01no099_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:38 2005CHROMAT_FILE: MSMg01no099_p01.g1 PHD_FILE: MSMg01no099_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACAACTCACTATTCAGCAAAGGACCGCGGAATTCTCCAA
TCTACGCTCACCATAGAGAGCAGTCTGTTGGGTTTGTTGTTGCTGTTGTT
GTTGTTGTTGCTGTTGTTGTTGTTGTGACTTAGTATCCGGTACTTAGCAT
ACCACCGTCATTAACAAATTGCCATCAACACAGTCCTCTACTTCCCAGCT
TTTCCTATTACATTGAAAAGTACCCTTGTGCCCCTCTCGCACCTTTCATC
CATTTTTTCCCTCTCTTTACCCCCTTCCGCCTCCCTCTCCCTTAATCACA
TCCCCCTTATTTCCTCTTTTGATGCAACGCCACCCCTTCCTATACGATAC
ACCCAACAACTTCAAATTAACCACCCCCCACCCTCCATTTTCTCACCTTC
CACATTTCACTCCCCCTACCATCCCCCCACTATTTTATACCCCTATCCCA
TTTCACCCTACTCACATTATATATATATACAATCCTCTATCTTAAGTTTA
AAAACACCCACCTTACCTTTTATTAACCAACCCTTTTACACATCTTCTCT
TCCCTACTTATCTCCTAACTTTTTTTTTTTCTTCCCCTCTACTACCCCCT
TTTACTCCTAACACAACTTCCTTTCTTACCCTTCTTCTCCTCACACTATC
CCAACCCCTTCAATCCTCATTCTCCACTTTCCCCCCTCATTCCCTACCCA
CATCTTTTCTTTCCTTCTTCTTTTTTTCCCTCCCTTCTCTCTTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGCACCGAAACCCTTCAGTA
ACAAATTAGCCAGACTCCTGGAGCAACAAGAGCTAGCCAGCCAATCTCAG
CAGGGTCCAGTTCCCATTATGAAGAGTCTCCAGTGCCCAGAGCTAAACCA
AATTCTCTGTTAACAGCCAGCATCCTTTGTGTTCCTACAAGTCTACCTGT
TTATCAGTATTGTGTTGATATCCCTGTACCATGATCATTGCCTGTATATA
TTGACTAAATGTCAACCCCCATCAATCAGCATACACAAATCTTCCCTGGC
ATTTTTTCACTAAGATAAGCTCTTATGATTTCTGCATCTCTTTACTAAAT
CTGTCAGAACACAAAAACAAAAATAAAAAATCTCGACTNTATTTACTGAA
CGTATCTGCTCTAGGCAGTACTTCCTTCAGAGAACTGGTCTACCCAGCAC
CAGGCCATCACAGAGAAAGATATTTTTGAAATGGTTCAAAAAGATTGTTG
AGCTGATGCATTGAGTTGACTTATTTATTCTAAAATATTACCATCTAAAA
TAGGAGTAAAGTCCTACTTGGAATTTCTGAGCATGCCTATAGAGGCCAAT
AAAGACTAGGGTTAAGGAAATACACTAAAGTTCATGGAGATAAATTCTTC
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_p01.g1 MSMg01no099_p01.g1 CHROMAT_FILE:
MSMg01no099_p01.g1 PHD_FILE: MSMg01no099_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:38 2005
         (547 letters)



>mm_chr13_40177862_40178809
          Length = 948

 Score =  975 bits (504), Expect = 0.0
 Identities = 537/549 (97%), Gaps = 3/549 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcagcaccgaaacccttcagtaacaaattagccagactcctggagcaacaagagctag 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcagcactgaaacccttcagtaacaaattagccagactcctggagcaacaagagctag 260

                                                                       
Query: 61  ccagccaatctcagcagggtccagttcccattatgaagagtctccagtgcccagagctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagccaatctcagcagggtccagttcccattatgaagagtctccagtgcccagagctaa 320

                                                                       
Query: 121 accaaattctctgttaacagccagcatcctttgtgttcctacaagtctacctgtttatca 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 accaaattctctgttaacagccagaatcctttgtgttcctacaagtctacctgtttatca 380

                                                                       
Query: 181 gtattgtgttgatatccctgtaccatgatcattgcctgtatatattgactaaatgtcaac 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gtattgtgttgacatccctgtaccatgatcattgcctgtatatattgactagatgtcaac 440

                                                                       
Query: 241 ccccatcaatcagcatacacaaatcttccctggcattttttcactaagataagctcttat 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ccccatcaatcagcatacacaaatcttccctggcattttt-cactaagataagctcttat 499

                                                                       
Query: 301 gatttctgcatctctttactaaatctgtcagaacacaaaaacaaaaataaaaaatctcga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatttctgcatctctttactaaatctgtcagaacacaaaaacaaaaataaaaaatctcga 559

                                                                       
Query: 361 ctntatttactgaacgtatctgctctaggcagtacttccttcagagaactggtctaccca 420
           || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 ctttattcactgaacgtatctgctctaggcagtgcttccttcagagaactggtctaccca 619

                                                                       
Query: 421 gcaccaggccatcacagagaaagatatttttgaaatggttcaaaaaga--ttgttgagct 478
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 620 gcaccaggccatcacagagaaagatatttttgaaatggttcaaaaagagattgttgagct 679

                                                                       
Query: 479 gatgcattgagttgacttatttattctaaaatattaccatctaaaataggagtaaagtcc 538
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 680 gatgcattgagttgacttatttattctaaaatattagcatctaaaatagaagtaaagtcc 739

                    
Query: 539 tacttggaa 547
           |||||||||
Sbjct: 740 tacttggaa 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 948
Length adjustment: 10
Effective length of query: 537
Effective length of database: 938
Effective search space:   503706
Effective search space used:   503706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)