BAC Information

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BAC

Clone NameMSMg01-100C01
Chromosome13 (Build37)
Map Location 53,147,861 - 53,148,224
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040321, Diras2, LOC100040572, Syk, Auh, Nfil3
Downstream geneRor2, Sptlc1, LOC100040421, Msx2, EG432760, E130119H09Rik, Drd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100C01.T7 (MSMg01no100_c01.b1)MSMg01-100C01.TJ (MSMg01no100_c01.g1)
ACCAG315903AG315904
length803753
length of high quality
(start - end)
93 (110 - 202)362 (134 - 495)
definitionCHROMAT_FILE: MSMg01no100_c01.b1 PHD_FILE: MSMg01no100_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:54 2005CHROMAT_FILE: MSMg01no100_c01.g1 PHD_FILE: MSMg01no100_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCNCATGGCCCCTCCTTCTTTTTTCCCCCCTCCTCCCATCCACCCN
CAAAACAAANNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCACCATCATGCCCCCCTAAAGTAGATACCCCT
AAGAGTGCAAACAACAGCTTAACCCTTTCCTTGGTATAAGATGGTTATGT
GGTGGGCTTGACTGGATTTGCTGCTATATGGTACCCGATGGAGCTCCCCG
GGGCTCTCTGGCTTCGTTATTGAGAACTATGTGGAGCAGATTGGTTTTGA
ACAAGGATTACTCTGATGCTGTCTTGCTGGGGCGCATACATCTGTGAAGT
AACTCTTGATCTGCGGCTCACCTCTCAAGATGGTCCTGTTATTCTAGGAT
CTGCAATAAAGTGTGCCTTGATAGACCTGACTAGATATTCTCTAGAAGCA
ACATTACTGAGTGAGTCAGATCCTCCCCAGGGATGTCCTCTATCATCCTA
CCCCCTCTTTTTTTCTATTAGATTCATTACTTCTAACTGTGTTCCTGACG
GTATTTTTGCCTTTATTTTAGCCACCTTTCTGCTACAACCTTGCAATGCC
TCACTTTAAATTTCTGCACAGAAGTTCCACAAACCCCGTGGAAAGGATTC
CTTCCCTTGGAAAATACTGCCCCAGATCGGGAGCTTAACCTCCCTTCTTC
TTGCATAATGGTCCTTCTGCCTTTGTAATAACCCTCCCGGGCTTTCTGGC
CTTTCCTTTCCATCCCTGAATAGGTTGTATAAGTCTCCCCGAAAATACTA
ATC
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNCCCCCCCCCCCCCCCCTT
TCCCCCCCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAAAACCTCCAGCCA
CCTGGAGGGACAAGATTTCCACAGAATGAACCGTAGGGATCATCGATCAT
TTTTCTTTTTGTTTTTATAGTTTTTACGTTTGAATCACCAATGTGGCTGT
GATTGGCTTTTTATACTTCCCTTCACAGATGTGTGTTTTGATGCACAACA
ACTCTAAAATGAGCTCGTGGGCTGGCCGGAAACATGGCAATTAAAAAAAA
AAAACTGTTTATGTAGGAAGTATGTTCCGAAAGGAAAAGCACAAATGTCG
AATGTTTGGGAACATGTGCATTGAGCTTTGCCTTTATGCTGAAGATGGCT
CACAGGGCGGCAGAACACGAGTTACTCCAGCACTTGATGATGACTAGGCT
TGCCTACCACTTTTAACGGTTTTAGGGTTCGTTGTTTCCTTCCGCGTAAA
AATGACCTCGATTGCCCCGAAATACGGCCCCTTAGGAGCCCCCTGCCAGT
CTTCTCTGCATCCACGAGCAGTTGGCCTCCCTCCCGTTTTGCTTGGATAA
TTCCGCCCTATCGGCTCCCAGGCAAATAACTGCCCCTGGCCAAAGAAATG
ACTATTTACCTCCAACGTTCCCCTGGATCCGCCCCGCCAAAGGGCCCACC
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_c01.g1 MSMg01no100_c01.g1 CHROMAT_FILE:
MSMg01no100_c01.g1 PHD_FILE: MSMg01no100_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:54 2005
         (362 letters)



>mm_chr13_53147661_53148424
          Length = 764

 Score =  646 bits (334), Expect = 0.0
 Identities = 356/364 (97%), Gaps = 2/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaaacctccagccacctggagggacaagatttccacagaatgaaccgtagggatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaaacctccagccacctggagggacaagatttccacagaatgaaccgtagggatcat 260

                                                                       
Query: 61  cgatcatttttctttttgtttttatagtttttacgtttgaatcaccaatgtggctgtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgatcatttttctttttgtttttatagtttttacgtttgaatcaccaatgtggctgtgat 320

                                                                       
Query: 121 tggctttttatacttcccttcacagatgtgtgttttgatgcacaacaactctaaaatgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctttttatacttcccttcacagatgtgtgttttgatgcacaacaactctaaaatgag 380

                                                                       
Query: 181 ctcgtgggctggccggaaacatggcaattaaaaaaaaaaaa--ctgtttatgtaggaagt 238
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 381 ctcgtgggctggccggaaacatggcaattaaaaaaaaaaaaaactgtttatgtaggaagt 440

                                                                       
Query: 239 atgttccgaaaggaaaagcacaaatgtcgaatgtttgggaacatgtgcattgagctttgc 298
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 atgttccgaaaggaaaagcacaaatgtcgaatgtttgggaacatgcgcattgagctttgc 500

                                                                       
Query: 299 ctttatgctgaagatggctcacagggcggcagaacacgagttactccagcacttgatgat 358
           ||||||||||||||||| ||||||||||| ||||| || |||| ||||||||||||||||
Sbjct: 501 ctttatgctgaagatggttcacagggcggtagaacgcgtgttagtccagcacttgatgat 560

               
Query: 359 gact 362
           ||||
Sbjct: 561 gact 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 764
Length adjustment: 9
Effective length of query: 353
Effective length of database: 755
Effective search space:   266515
Effective search space used:   266515
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)