Query= MSMg01no100_d13.b1 MSMg01no100_d13.b1 CHROMAT_FILE:
MSMg01no100_d13.b1 PHD_FILE: MSMg01no100_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:01 2005
(504 letters)
>mm_chr13_7798870_7799773
Length = 904
Score = 928 bits (480), Expect = 0.0
Identities = 495/500 (99%)
Strand = Plus / Minus
Query: 5 gaattctttattttctatgttaacattaaatatgacttagaacagtacctcctgcaacac 64
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 704 gaattctttattttttatgttatcattaaatatgacttagaacagtacctcctgcaacac 645
Query: 65 ttttactgactttaaaattctagccataatgctttctccaaattttgggagtccgctcta 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 644 ttttactgactttaaaattctagcaataatgctttctccaaattttgggagtccgctgta 585
Query: 125 tgaaatttccttctttgcctacctaaagccatctctgattggctttcataaaaatccagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgaaatttccttctttgcctacctaaagccatctctgattggctttcataaaaatccagt 525
Query: 185 ggccaacttgctgggcaggaagtggaagggagagagaaaggaactctgggaaggagaagg 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggccaactcgctgggcaggaagtggaagggagagagaaaggaactctgggaaggagaagg 465
Query: 245 aggaaagcttttttgccaggagatatgaaataaggcaggtgtgatcacaggccggaaagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aggaaagcttttttgccaggagatatgaaataaggcaggtgtgatcacaggccggaaagt 405
Query: 305 taaccacatggcagaatgggactgggtggacaggttaacttggatgagctagttgagagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 taaccacatggcagaatgggactgggtggacaggttaacttggatgagctagttgagagt 345
Query: 365 ctgcccagctaaagcctaaactttgaaatgttaaaaggtctctatgtggttatttaagaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctgcccagctaaagcctaaactttgaaatgttaaaaggtctctatgtggttatttaagaa 285
Query: 425 aaagctggttaaggaataattgctgctatattaatttccaatgttaatatatacaaaata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaagctggttaaggaataattgctgctatattaatttccaatgttaatatatacaaaata 225
Query: 485 ttaatcactctaatctacac 504
||||||||||||||||||||
Sbjct: 224 ttaatcactctaatctacac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_d13.g1 MSMg01no100_d13.g1 CHROMAT_FILE:
MSMg01no100_d13.g1 PHD_FILE: MSMg01no100_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:01 2005
(507 letters)
>mm_chr13_7697003_7697909
Length = 907
Score = 965 bits (499), Expect = 0.0
Identities = 505/507 (99%)
Strand = Plus / Plus
Query: 1 aaggacaattgaagtgaatctataaggcagtgtttttttagataaggagagtctgcaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggacaattgaagtgaatctataaggcagtgtttttttagataaggagagtctgcaaga 260
Query: 61 aagccagaactcagcctggacgcctttaattactcagataccagtattgattgggataac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccagaactcagcctggacgcctttaattactcagataccagtattgattgggataac 320
Query: 121 aactgtgcagaaatgaaggccagagatctgcttgtaagagaagggcaggcttgttttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgtgcagaaatgaaggccagagatctgcttgtaagagaagggcaggcttgttttttt 380
Query: 181 aagcagtttattgaactatctacatggtctcaggcgatactagctctaatcctaggaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcagtttattgaactatctacatggtctcaggcgatactagctctaatcctaggaaat 440
Query: 241 aggaggagccttaggggagtaaaactgcaatgagcccttgactgatgagtggtttcttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaggagccttaggggagtaaaactgcaatgagcccttgactgatgagtggtttcttta 500
Query: 301 gatagagatgatttatagtcagaaaacacaaacaaaggcagggtcaaaaatgtcaaaaaa 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatagagatgatttatagtgagaaaacacaaacaaaggcagggtcaaaaatgtcaaaaaa 560
Query: 361 gattaaaagttaacagaatgcttacaaatccctgattgggaagcaatcagaaagcagggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattaaaagttaacagaatgcttacaaatccctgattgggaagcaatcagaaagcagggg 620
Query: 421 tgcattgaaaaacagccctgaggtaactggcaacatcacaggtgtaattctgtgctatgt 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcattgaaaaacagccctgagataactggcaacatcacaggtgtaattctgtgctatgt 680
Query: 481 gtaggcggtgtgctgaatgaacattac 507
|||||||||||||||||||||||||||
Sbjct: 681 gtaggcggtgtgctgaatgaacattac 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
