BAC Information

Click to search

BAC

Clone NameMSMg01-100P08
Chromosome13 (Build37)
Map Location 34,032,032 - 34,180,461
singlet/doubletdoublet
Overlap geneNqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a
Upstream geneSerpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a
Downstream geneLOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100P08.T7 (MSMg01no100_p08.b1)MSMg01-100P08.TJ (MSMg01no100_p08.g1)
ACCAG316499AG316500
length711784
length of high quality
(start - end)
143 (167 - 309)284 (137 - 420)
definitionCHROMAT_FILE: MSMg01no100_p08.b1 PHD_FILE: MSMg01no100_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:00 2005CHROMAT_FILE: MSMg01no100_p08.g1 PHD_FILE: MSMg01no100_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:00 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(34,180,319 - 34,180,461)(34,032,032 - 34,032,315)
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTGTCCATCCATCTCCTTTCTCAAGCCAATTGTAAGTCAGCTCTTG
TCCCCACAGGCAACAAATATGTACCTCGGGCCATCCTAGTGGACCTACAG
CCGAGCACCATGGTGGGGTCAGGACCGTTTGGCCAGATCTTCAGGCCAGA
CAACTTTGTGTTCGGTATGTTGTCATGCTCCATGAGAGCTGGCCAGATGA
CTCACTCCCTTCCTAGCAGCCGTGGGCTTTACAGTTCTGTGTGCAGCATC
CAGCTGAGCCTGTGTCTCACAGACCACAAGTCCTGACCTAACCTACGCAG
CTGATAAGATCATGTCTGTGGCCACTCTTGACAGCTCAGAGGAGAGTGTG
GGCCTGGCACAGACTGTACAAGGCCTCTTGAGGAGCACCGTCTGGTAGGA
AGGCAGGAAGTGCGACGGGAGTAGCACCCCCCCCCCTGTTCTACCGTTCC
CCTCCCCCCTCTCTCTCCCACTTCACCCTTTTTTCTCTTCCCCCCTTCTA
TCCTTTTCTCCCCCTATCTCACACCCCCCTCCCCGCCCCTCTCCCTCCGC
ATTCACCCTCCCTTACCCCTTCTACCTTTCCCCCCCTCCCCACCTACCCC
CCCCTCTCTCTCCTCCCTTTCTTTCTCTTTCTCCCCCCACCTCTCCATTA
CCTTCCCTTCC
TTTTNTTTTCCNTTTTTNNNNTTTTTTTTTTTTTTCCTCCNNCCCACGTC
CCCCNNNCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAATCCATTT
GGACAATTGGAATTGATAAACATGTGCATCAAAGTCTGAAAAATTGACTT
AAGAAAAAACAAGAAAAAGGGGAATCATATCTCCATACACCACAAAAATT
TTAAAATTTGGATGCCAAGGAATTCTCTGAGTGTGGGGAAGAGGGCATGT
TTGTATTTTTCTGGCAGGATGCTGAAGGAGCATGCTAGCTGCCAGAGTGG
TTAATGAGACATGCTGATGCTGGAACAAAAAATGATGCTGATTGTGAGTT
TGTAGAGTGTCATGACAATGATGATAGTGAACCTGCCTTGGACCTATGTC
CCTGATCCATCCCTTTTTACATCCAACAGCATGGGAAGGCCTAGAAGTTG
TGGTGATGGTAAACAACACTAAGTTGATGGCTATGACTGCTGTGAGAAAT
TTCACTATCAATAGAGAAATTACCAAGGATTGGGAACTAGTTTTCTCCAT
ATGGCTTTGGGATTAGGTGCACCTAAAGGACCTCCTGCCCTAGTTTCTGA
AAGATAAAATTATTAGCTAGTTTGGAAAATCTATACATAACCATAACACA
CAGCACCACAGCCTTCCTTTTCCTTATTGTAGGAATCCCCTAACCCCTTC
TTTTTTTGAAGTTTCCCCCCCTAATTGTCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_p08.b1 MSMg01no100_p08.b1 CHROMAT_FILE:
MSMg01no100_p08.b1 PHD_FILE: MSMg01no100_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:00 2005
         (143 letters)



>mm_chr13_34180119_34180661
          Length = 543

 Score =  261 bits (135), Expect = 1e-74
 Identities = 141/143 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcaggaccgtttggccagatcttcaggccagacaactttgtgttcggtatgttgtcat 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 343 ggtcaggaccgtttggccagatcttcaggccagacaactttgtgtttggtatgttgtcat 284

                                                                       
Query: 61  gctccatgagagctggccagatgactcactcccttcctagcagccgtgggctttacagtt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gctccatgagagctggccaaatgactcactcccttcctagcagccgtgggctttacagtt 224

                                  
Query: 121 ctgtgtgcagcatccagctgagc 143
           |||||||||||||||||||||||
Sbjct: 223 ctgtgtgcagcatccagctgagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no100_p08.g1 MSMg01no100_p08.g1 CHROMAT_FILE:
MSMg01no100_p08.g1 PHD_FILE: MSMg01no100_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:00 2005
         (284 letters)



>mm_chr13_34031832_34032515
          Length = 684

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttataatccatttggacaattggaattgataaacatgtgcatcaaagtctgaaaaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttataatccatttggacaattggaattgataaacatgtgcatcaaagtctgaaaaattg 260

                                                                       
Query: 61  acttaagaaaaaacaagaaaaaggggaatcatatctccatacaccacaaaaattttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttaagaaaaaacaagaaaaaggggaatcatatctccatacaccacaaaaattttaaaa 320

                                                                       
Query: 121 tttggatgccaaggaattctctgagtgtggggaagagggcatgtttgtatttttctggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggatgccaaggaattctctgagtgtggggaagagggcatgtttgtatttttctggca 380

                                                                       
Query: 181 ggatgctgaaggagcatgctagctgccagagtggttaatgagacatgctgatgctggaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatgctgaaggagcatgctagctgccagagtggttaatgagacatgctgatgctggaac 440

                                                       
Query: 241 aaaaaatgatgctgattgtgagtttgtagagtgtcatgacaatg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaatgatgctgattgtgagtttgtagagtgtcatgacaatg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)