BAC Information

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BAC

Clone NameMSMg01-102D20
Chromosome13 (Build37)
Map Location 102,923,254 - 103,077,436
singlet/doubletdoublet
Overlap genenone
Upstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
Downstream geneCd180, Mast4, EG621312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102D20.T7 (MSMg01no102_d20.b1)MSMg01-102D20.TJ (MSMg01no102_d20.g1)
ACCAG317441AG317442
length784707
length of high quality
(start - end)
237 (128 - 364)174 (78 - 251)
definitionCHROMAT_FILE: MSMg01no102_d20.b1 PHD_FILE: MSMg01no102_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:46 2005CHROMAT_FILE: MSMg01no102_d20.g1 PHD_FILE: MSMg01no102_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,077,207 - 103,077,436)(102,923,254 - 102,923,427)
sequence
NNNNNNNNNNNNNNNNNNTTTTNNNNCCCCCGGCTGCGGNNCNCCATATA
TTNNNNCTTCTATAATTGGGCGCTAATACGACTCCTATTCAAGAGGACCG
CGGAATTCTATTTTTTCCAAAGAGAACAGGTGGACGCTAAGACAGAGAAC
AGCCACATCTTGTTCCTATAAACACACACATTCTACCCACCTTTCCACAT
ATCCTTTTGACCTTTGTTTGGTTTTCTGCATGGAAAAGTGCATGGGCTAT
TTATATTCCTGCCAGTTGGGTATGATAGGAAGGGTTTGTGGGACTTTCTG
CTTTTAACAACAATTCTGACATTGATGAATCTCACCACCACCATGCTTTC
AAAAAGCTACAACCATGTGTTTTTTTTGCGTATGGGGTGGCACTGTGCTT
GGATTGAGTTTTTTTTTACCCCCCCCACCCCCCAAGTATATGATTAAATG
CTTTAAATCTGTTATTAAAAATAAACAAAAAAAAAACGCCTTTGAGGGAG
GAGTACCTTATTGTCCTTAATATACTATCGCCATATGCTAGAGCTATTAC
ATTTTTTAAGCTAAACTACATCAATTTTTCTTTCATTATATTACTGGATG
TCGAAATCCACTCTAACTTCTCTCGAATCCCTTCCTGGGTTTCATTCTTT
CCTATAATCATGGGCATAAACCGACTGTTCATTTCTAGAAAAAGGATTCC
TCATTAGCTCCTCTAGCACAACTAAGCCCAAAAAAATAAATTTTATCTTT
TGCACACCGAGGACTTTAATAGCGTATATTTTAT
NACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTTTCGAAAAATTCCAGACTGAGTGATTTATCTTCCCT
GCATCTGAAAACCAGTGGACATCTGTATCTCTTTTAGGAGATTACTTGAA
TGAATTGACTGATCAATGATTTAAAATATCTTTTAAAACTCAGACATGTC
CACGTGTGCTCGAGTGCACACACACACACACACACACACACACACACACA
CACAGGTATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGATATTTTTTACAGAGACAGAGACAGAGAA
ACAGAGACAGATTTATTTACCCCCACCCCCCCCCCGAGAAACAGAGACAG
AGAGAATGAATCAAACCCGACCAAGGAAGAAACTTTCAGCTTGCTTGCCT
TTGCTATGTAACATCTTTACAGGTAAATCCCCAAACAGCAAGCTGCCGAG
CACGCACAAATTAACATGCTTGCAAGTGACCTGCCCAGAATGGAATTTAT
TTTCCAAAGCACTTTGCAGATCTTCCTCTAATCCGTGTGTACTATACATT
CTAATCTTTTTATAATAATAAGGATTCTCCTCCAATGTTGTCATTAAGAG
GGGCGATCCCCTTTATGATGACCTCATAAATATGTTGATCGCTCGTTCAT
GGTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_d20.b1 MSMg01no102_d20.b1 CHROMAT_FILE:
MSMg01no102_d20.b1 PHD_FILE: MSMg01no102_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:46 2005
         (237 letters)



>mm_chr13_103077007_103077636
          Length = 630

 Score =  420 bits (217), Expect = e-122
 Identities = 229/237 (96%), Gaps = 7/237 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtggacgctaagacagagaacagccacatcttgttcctataaacacacacattctacc 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aggtggacgctaagacagagagcagccacatcttgttcctataaacacacacattctacc 371

                                                                       
Query: 61  cacctttccacatatccttttgacctttgtttggttttctgcatggaaaagtgcatgggc 120
           ||||||||||||||||||       |||||||||||||||||||||||||||||||||||
Sbjct: 370 cacctttccacatatcct-------tttgtttggttttctgcatggaaaagtgcatgggc 318

                                                                       
Query: 121 tatttatattcctgccagttgggtatgataggaagggtttgtgggactttctgcttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tatttatattcctgccagttgggtatgataggaagggtttgtgggactttctgcttttaa 258

                                                                    
Query: 181 caacaattctgacattgatgaatctcaccaccaccatgctttcaaaaagctacaacc 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caacaattctgacattgatgaatctcaccaccaccatgctttcaaaaagctacaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 630
Length adjustment: 9
Effective length of query: 228
Effective length of database: 621
Effective search space:   141588
Effective search space used:   141588
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no102_d20.g1 MSMg01no102_d20.g1 CHROMAT_FILE:
MSMg01no102_d20.g1 PHD_FILE: MSMg01no102_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:46 2005
         (174 letters)



>mm_chr13_102923054_102923627
          Length = 574

 Score =  321 bits (166), Expect = 1e-92
 Identities = 172/174 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactgagtgatttatcttccctgcatctgaaaaccagtggacatctgtatctcttttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactgagtgatttatcttccctgcatctgaaaaccagtggacatctgtatctcttttag 260

                                                                       
Query: 61  gagattacttgaatgaattgactgatcaatgatttaaaatatcttttaaaactcagacat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gagattacttgaatgaattgactgatcaatgatttaaaataccttttaaaactcagacat 320

                                                                 
Query: 121 gtccacgtgtgctcgagtgcacacacacacacacacacacacacacacacacac 174
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccacatgtgctcgagtgcacacacacacacacacacacacacacacacacac 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)