BAC Information

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BAC

Clone NameMSMg01-102G19
Chromosome13 (Build37)
Map Location 104,916,943 - 104,917,386
singlet/doubletsinglet
Overlap geneSgtb
Upstream geneMast4, EG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln
Downstream gene2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102G19.T7 (MSMg01no102_g19.b1)MSMg01-102G19.TJ (MSMg01no102_g19.g1)
ACCAG317574AG317575
length741713
length of high quality
(start - end)
177 (61 - 237)463 (68 - 530)
definitionCHROMAT_FILE: MSMg01no102_g19.b1 PHD_FILE: MSMg01no102_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:01 2005CHROMAT_FILE: MSMg01no102_g19.g1 PHD_FILE: MSMg01no102_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTGTTGTTGNNTGCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TCGAGAATCCGCGGAATTCATTTCCTGATTCCCCTGGATGTGGTGGCGCA
CTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTAGGCCCGCCTGGTCT
TCAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCG
AAACCGCCCACCCCCCACCCCCCACCCCCGCAACAAATCAAAACAAAACA
AAAACCAGAAGCTCCTCGAAGAACATTGAAACAGGCATAGAGGTTATAAA
ACACCGAAACAAAACAAACACAGATTTGCCCAGAGACTAAGTTTTGTAGT
CTGGATTTGGGGCGGCCCCTTGGGCGGTTTGCCATTCTACACCCCATCAC
GTGGATTCAGGCTCCTTCTGAGAGCCCGAGAGTCCGTTATTTGACTCTGT
CATTCCTTATCCGTCTTCTCCCCTCGAAGCTGTTTGAGACTGTACTTTTT
GCCTGTGCTGCTCACTGTTGTAACCTTGTGGTCTTGCACCCTAATAATGC
TCCGATGGGTCTGGTGAACCTTCCTCGTCCCCGTCTCCTTATTGAGTATT
GCTTTTTCTCCGTGCCTCTTCTTCCCTCTCCTCATCCCCTTGTCTGTTTG
CTATCCCCCGACACCTCCTCTCTTCTTACTCCTATTTCCCTCCGTTTCGC
CCTTCTCCCCTTCTCCCGCCTGTCTTCCCATTCCGCCTCAC
AGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATTAGGAGACAGGCAATGTTGGACTACTTAGC
ACATAGCCTGTAAGCTACTTTAATAAATCTCAGACAAACACAGACAGACA
GACAGCTGGCCGGATGGATAGACGGATAGACACACACACACACACACACA
CACACACACACCCTGAGGGGGGGGGAGGATGAATTTTTCATTCTATCAAT
TCTATTCCTAATACAACTATTATTGCATCCCATCAGCACTGAATATCCAA
AGTAAATGGCCAAAATGTTTGTTGGCTCTCCATGAACAGTATTCTATAAA
ACCAATCCTATAGAAAGGCAGCTAGAAGAGACACTGATAATCCTGGACAC
TGGAACCAGGAATATAGATTTTCCAGTTTTCTGTAAGAAATATCACATCA
TGTGTAGATTAGCTCTGATAAAATTTTTGAAGATCAGCTTTCACAACTAA
TGTGCGCATTAATGGCTGGCACACATGTTCTCCAGAGAGTGGATTTTAAA
ACCACAAAAGACTCAAACTTTTGCCAGACATGTGGTGTACGTCTTTAATC
TTTGCCACAATGTCAGCCCTGGTGAGGCAGATTTCTGTGAGTTCGAGGAC
AGTCCCCTGTCTTAACTATATAAATAAACTACCCTATTACAGTTCTGTAC
ATGCTTTTCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_g19.g1 MSMg01no102_g19.g1 CHROMAT_FILE:
MSMg01no102_g19.g1 PHD_FILE: MSMg01no102_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:01 2005
         (463 letters)



>mm_chr13_104916599_104917460
          Length = 862

 Score =  806 bits (417), Expect = 0.0
 Identities = 443/463 (95%), Gaps = 19/463 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattaggagacaggcaatgttggactacttagcacatagcctgtaagctactttaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tattaggagacaggcaatgttggactacttagcacatagcctgtaagctactttaataaa 729

                                                                       
Query: 61  tctcagacaaacacagacagacagacagctggccggatggatagacggatagacacacac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |        
Sbjct: 728 tctcagacaaacacagacagacagacagctggccggatggatagacggatgg-------- 677

                                                                       
Query: 121 acacacacacacacacacacacaccctgagggggggggaggatgaatttttcattctatc 180
                     ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 676 ----------acacacacacacaccctga-ggggggggaggatgaatttttcattctatc 628

                                                                       
Query: 181 aattctattcctaatacaactattattgcatcccatcagcactgaatatccaaagtaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aattctattcctaatacaactattattgcatcccatcagcactgaatatccaaagtaaat 568

                                                                       
Query: 241 ggccaaaatgtttgttggctctccatgaacagtattctataaaaccaatcctatagaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggccaaaatgtttgttggctctccatgaacagtattctataaaaccaatcctatagaaag 508

                                                                       
Query: 301 gcagctagaagagacactgataatcctggacactggaaccaggaatatagattttccagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gcagctagaagagacactgataatcctggacactggaaccaggaatatagattttccagt 448

                                                                       
Query: 361 tttctgtaagaaatatcacatcatgtgtagattagctctgataaaatttttgaagatcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttctgtaagaaatatcacatcatgtgtagattagctctgataaaatttttgaagatcag 388

                                                      
Query: 421 ctttcacaactaatgtgcgcattaatggctggcacacatgttc 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctttcacaactaatgtgcgcattaatggctggcacacatgttc 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 862
Length adjustment: 10
Effective length of query: 453
Effective length of database: 852
Effective search space:   385956
Effective search space used:   385956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)