BAC Information

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BAC

Clone NameMSMg01-102K16
Chromosome13 (Build37)
Map Location 19,798,936 - 19,799,114
singlet/doubletsinglet
Overlap genenone
Upstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3
Downstream geneA530099J19Rik, Gpr141, LOC432730, Elmo1, LOC100040226, LOC665381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102K16.T7 (MSMg01no102_k16.b1)MSMg01-102K16.TJ (MSMg01no102_k16.g1)
ACCAG317748AG317749
length694695
length of high quality
(start - end)
182 (125 - 306)170 (119 - 288)
definitionCHROMAT_FILE: MSMg01no102_k16.b1 PHD_FILE: MSMg01no102_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:19 2005CHROMAT_FILE: MSMg01no102_k16.g1 PHD_FILE: MSMg01no102_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAGAGGCGCGGAATCA
CCTGATTTCCAAGAGTGTATGCAAATTATACAAAACATATACCGCAGAGA
CTATATAAATATATACACATAGGGATACTGTGAGAGGAGGAAATTATGAA
TTAGCAGTCACACTGAGCTGTATCCATTGGAGTCTGAAATTATGTTGACT
AACAATTGCACCTACAACATTATTTTTATTTCGTATTTATATGAGCATAA
TGTGGATGCCTTATTCTTTTTAAATTTATCTTGCATTTTAAAGTAATTTT
AAACAAATGGTATTATTTATTGCATACGATATACCCTTTATAGACAGATT
TTGTTTTTGTACGTAGAATTCGTCTACCACAAGGATCTATCAAGCCGTCT
TTTATAGAACACTTTGCACAAATATAGTAGATATACTTACTATGCACAGG
TAGACAGTATAGAGACTGTTTTTCGTTTGCTGCTGCTTTGCATCTTGCTG
GAAGAAAGATTCTTCCTCTCATCTGAGGCTGTTCCTTTACCTATGCCCTC
TCTTCTCTGGTCTCCTAGCTCAGCAACCTTGTTTCCCAAGACTGCTACAT
CTTTTATTCTACGGTCCCATCGCCGCCTCCTTATTTATATTCCTTTCTAC
CTTTTCTATCACCTTCTCCTCCCTGTTGACTTACTTCTCCCTCC
ATGAAGTGGTAGGCTGGCGGCGCCTGGTCCCAAATTGAGGTGAACTATAG
AATTTCCGCGAAATTCTCTTGTTTAGCACTGTACTCATTTTTTAGTAGGG
TTATTTGGTTCTCCGCAGTCTAACTTCTTGAGTTCTTTGTATATTTTTAT
ATTATCCCTCCATTAGATGTAGGGTTGGTAAAGAACTTTTCCTAATCTGT
ACATTGCTATTTTTTCCTGATGACAGTGTCCTTTTCCTTACAGAAGCTTT
TCAATTTTATGAGGTTCCATTTGCTAATTCTTGAGCTTAGAGCATAAGCC
ATTCGTGTTCTGTTCATGAAAATTTCCCCTGTGCTGTGTGTTTGAGGTTT
TCCCCACATACTTTTCTATCAGATTCAGCGTATTTGGTTTTATATGGAGG
TCCTTGATCCACCTGGACTTGATCTTTGTACCACGAGATAAGAATGGATC
CACTTGTATTCTCCACCATGCTTGACCCTCAGATGAACCAGTACTATTTT
GTTGAAAATGCTGCCTTTTTCCCCACCATATTATTTTACCTTCTTTGCCA
TATATCATGTGACCATAAATGTATGGGGTTTATTTCTAGGTCTTCAGTTA
TTCCACTTCTTATCTACCCGTTTGTTCCCTTAATCCCTATTATGTCTCTT
TTATCACTTATCGCTTTTTTACCCCACGCTTGCAGCCCACGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_k16.b1 MSMg01no102_k16.b1 CHROMAT_FILE:
MSMg01no102_k16.b1 PHD_FILE: MSMg01no102_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:19 2005
         (182 letters)



>mm_chr13_19798736_19799317
          Length = 582

 Score =  339 bits (175), Expect = 9e-98
 Identities = 178/179 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactgtgagaggaggaaattatgaattagcagtcacactgagctgtatccattggagtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 379 atactgtgagaggaggaaattatgaattagcagtcacactgagctgtatccattggtgtc 320

                                                                       
Query: 61  tgaaattatgttgactaacaattgcacctacaacattatttttatttcgtatttatatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgaaattatgttgactaacaattgcacctacaacattatttttatttcgtatttatatga 260

                                                                      
Query: 121 gcataatgtggatgccttattctttttaaatttatcttgcattttaaagtaattttaaa 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcataatgtggatgccttattctttttaaatttatcttgcattttaaagtaattttaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)