BAC Information

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BAC

Clone NameMSMg01-102P05
Chromosome13 (Build37)
Map Location 40,300,086 - 40,300,573
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102P05.T7 (MSMg01no102_p05.b1)MSMg01-102P05.TJ (MSMg01no102_p05.g1)
ACCAG317958AG317959
length696663
length of high quality
(start - end)
338 (44 - 381)497 (47 - 543)
definitionCHROMAT_FILE: MSMg01no102_p05.b1 PHD_FILE: MSMg01no102_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:42 2005CHROMAT_FILE: MSMg01no102_p05.g1 PHD_FILE: MSMg01no102_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGATTGGATGACCTGGGTGGAGCTAGATGAGGTCAGTCGGTGCGAGT
ATAGGAATTTTTGTTGTTTAGCCCTTGCCCTAAGTAGAAGCTAGTTGTAG
AGAGAAGCTGTTATAAGTGAAGTTGTTTTAAGAATAGCACTTGCTGCAAG
AGGAGAAAGGAAGAAGGAGAACAAGTAAAGAAGCAGTTGCGTTAACCCGA
CTTGGTGTCCGTGTCATTCCTGTCTCCTCCGGCTCGAAGGACCAGCAACA
TAGCTGATCTTTCCAATGTCTGACTACAACATGTCAGGGAAAGATAGGCT
TCTTTATTATATAATGGCGAAGTGGCTGGACTCTCAATAACAGAACAGGT
AAATAGACCTGACTTTTATACCATGCACAAATAACCATGCACAACGGACA
TTTTTTTTTACAACTAACTCTATAAAAATAGAGAAAAGCCTAATGAGTAA
CTTCATGAGCTTTATCTTATCACTAACTTCTCAGATTTGAATTGATGCCA
GACGTCCAACATACCCCTCATATCGGCTCGAAAGGAGCTTCCGAGCCAGT
TGCTCAGCTGACGAGCCTCTTCTCCACCCTAGTACACATCTGCCCGATAA
TAAGGCTCCCCTACCTTTTTCTTCCTTGCCCTCATTTGTTTATAAG
CCTGTCCAAACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTG
TGGGGAAATGTTTGTGGAAAAGGGACCTTAATTGACAAGATTAAATAGAG
GGAACAGTCTATTATGGGCCTAATTGGAAGATGGTATATTGAGGTTGTCC
TACCAGAAGTATGTGCAGAAAGATGCCTTGCCAGAATCCAATAATTTCCC
TTATTTTTGTTGTAATTATAAATATTATAAAATTATAAAAAATTATAAAA
AATTTACCCACTGGGCTTTTATTTTAATTAATATGATAAGTGCTTATAGT
TCAGATAACTTTCAAATTAACCTTTGGTTAAAAAAATTTGGGCTAATACA
CTTTTTAATTTTTTCTTCACTACATGATCCCCATACTCTACAATTATATT
CTTTTGGTCCATTTCAAACCTTCTTGTTTTTAAACATTTTTTTTCCATTG
AGGTGTGCTAGAGTTTGTTTTTATTACCTGCTTTTGTTCAACTGTCCATT
CTCTCTCAAGTCCCTAGGTAAAAATGTAAACTCTGGATGCAGGAGCCTCA
CCTATTCTTGTTGGCTTGACTGAGGGTACCCCATATGAGCCTGTGAGTCA
TTGTTATGGCCCATGTGTGGAGTGGTGTCTTTTCAAGTTTGAAAGCTTTG
ATCCACGGAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_p05.g1 MSMg01no102_p05.g1 CHROMAT_FILE:
MSMg01no102_p05.g1 PHD_FILE: MSMg01no102_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:42 2005
         (497 letters)



>mm_chr13_40299676_40300573
          Length = 898

 Score =  882 bits (456), Expect = 0.0
 Identities = 480/488 (98%), Gaps = 2/488 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  atgtttgtggaaaagggaccttaattgacaagattaaatagagggaacagtctattatgg 71
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 898 atgtttgtggaaaagggaccttaactgacaagattaaatagagggaacagtctattatgg 839

                                                                       
Query: 72  gcctaattggaagatggtatattgaggttgtcctaccagaagtatgtgcagaaagatgcc 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gcctaattggaagatggtatattgaggttgtcctaccagaagtatgtgcagaaagatgcc 779

                                                                       
Query: 132 ttgccagaatccaataatttcccttatttttgttgtaattataaatattataaaattata 191
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttgccagaatccaataatcccccttatttttgttgtaattataaatattataaaattata 719

                                                                       
Query: 192 aaaaattat-aaaaaatttacccactgggcttttattttaattaatatgataagtgctta 250
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aaaaattataaaaaaatttacccactgggcttttattttaattaatatgataagtgctta 659

                                                                       
Query: 251 tagttcagataactttcaaattaacctttggttaaaaaaatttgggctaatacacttttt 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tagttcagataactttcaaattaacctttggttaaaaaaatttgggctaatacacttttt 599

                                                                       
Query: 311 aattttttcttcactacatgatccccatactctacaattatattcttttggtccatttca 370
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atttttttcttcactacatgatccccatactctacaattatattcttttggtccatttca 539

                                                                       
Query: 371 aaccttcttgtttttaaacattttttt-tccattgaggtgtgctagagtttgtttttatt 429
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 538 aaccttcttgtttttaaacatttttttgtccattgaggtgtgctagagtttgtttttatt 479

                                                                       
Query: 430 acctgcttttgttcaactgtccattctctctcaagtccctaggtaaaaatgtaaactctg 489
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 478 acctgcttttgttcaactgtccattctctctcaagtccctgggtaaaaatgtgaactctg 419

                   
Query: 490 gatgcagg 497
           ||||||||
Sbjct: 418 gatgcagg 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space:   432456
Effective search space used:   432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)