TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAGATTCCTGACATGAGGTGCGTGGAAGAACCAAGCACAGCCCGC
TCTAGCACTGATGCACCTGCCTCATGCTGAGAGTGACCTGGATGTTATTG
TGTGTCTATGGAATATATAGCCTTGGGCAAAACCCCATTGCATGGCAGTA
AACTCAGTTCACTTCAGACACGCAGGCAAATTAGTAACAGGGAGCGCTCA
GGCTTCCTGTCCTGTCAAAGAGCGCAGTTCTAGATTGGGGGATGAGCACA
GGAGAGTGAGGATCTTTTTTTAGGAAGTGGAACCCCCTGGACTAACATTG
TGTTTATCTGAGTTGGGTTGACAAGAGCCACTGTTAAGAGAGTAATTGTT
GCCTCCTGGTTGGTCGAGGTGTTACATATGCTCTGTAGTACTAAGTGTTT
CCCTAGGGAACAGGAATCATTATCTGATGGTTTCCTCTTCCATTTCTTCC
TCTTAAGGAAAGAGTGGACTGTCAGGCTGTATGTTTGCCTCACCATTGGG
GTGCCTGAGCAAACCACTCATCGGAGGCAGAACACAGCCTGAAATAGGTC
TCCCATTCTGTGTCTCCCTAGTGAGAACCAGCGTTTATTGGCCTGTCACT
TATACTGAGTCTCCTGTGTACCCTGACTCTATTGGCTTGCTTCTTGTTCT
TGGAAATGGC

NAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGCTCTTTTCCAAAGGAGAGGCCAAA
GTCAACAGACCCTTCAATTTGTGTCATAACTCATGTTGATGAAGATGAGT
TTGAGTTCTTTGGCTCTGATGTACCCCTTTTCATATTGGTTTGTCCTCAG
CCCTTCTTCTCCTTCCCTCCTCTGGTAGAGGTTAGGCAGGCAGAGTGGAC
TTTCTCAATTTCTCAGTACCTCCCCATCAGAGGCCAACCTGACTTGTAGG
TCTTTGCCTGGAGAGCTGGTTCAGTGTAGGAGGAGGAAGCTGCGTTTTGG
CCTCAGATCCAGACTCTTCTCTGATGCATCATGACTATTTAAAGGGATGA
TGTTTTCATCATCCTTCACTGTCACCTTAAAGACAGAGGAAAAGCAGCAC
ACTGATGCTGAGACCTGTTAGTTCATTAGAAACCAGACAACCTGCAGAAT
TCCTGGGTTCCATGGGGAAACCAAGAAAGTACAAAGGGACAATGGAGTGG
GGTAAAAAGGAGAATAGCAAGAGACAGGCGATATGAAGAAGGGAATGTCG
GGGAAGGGTGGCCTCTTTATCTAGGACAGGGAAAGCTCACCCCGTTTTCC
CCCTTTTTCTTTTTCTTTCCTTTTCCCCCCTTTTCCCCCCCCCTCTCGTC
CCCCTTTATTCCG

Query= MSMg01no103_g12.b1 MSMg01no103_g12.b1 CHROMAT_FILE:
MSMg01no103_g12.b1 PHD_FILE: MSMg01no103_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:19 2005
         (249 letters)



>mm_chr13_71042052_71042700
          Length = 649

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaggtgcgtggaagaaccaagcacagcccgctctagcactgatgcacctgcctcatg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaggtgtgtggaagaaccaagcacagcccgctctagcactgatgcacctgcctcatg 260

                                                                       
Query: 61  ctgagagtgacctggatgttattgtgtgtctatggaatatatagccttgggcaaaacccc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ctgagagtgacctggatgttattgtgtgtctatggaacatatagccttgggcaaaacccc 320

                                                                       
Query: 121 attgcatggcagtaaactcagttcacttcagacacgcaggcaaattagtaacagggagcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgcatggcagtaaactcagttcacttcagacacgcaggcaaattagtaacagggagcg 380

                                                                       
Query: 181 ctcaggcttcctgtcctgtcaaagagcgcagttctagattgggggatgagcacaggagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaggcttcctgtcctgtcaaagagcgcagttctagattgggggatgagcacaggagag 440

                   
Query: 241 tgaggatc 248
           ||||||||
Sbjct: 441 tgaggatc 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no103_g12.g1 MSMg01no103_g12.g1 CHROMAT_FILE:
MSMg01no103_g12.g1 PHD_FILE: MSMg01no103_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:19 2005
         (520 letters)



>mm_chr13_71078738_71079657
          Length = 920

 Score =  967 bits (500), Expect = 0.0
 Identities = 515/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcttttccaaaggagaggccaaagtcaacagacccttcaatttgtgtcataactcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gctcttttccaaaggagaggccaaagtcaacagacccttcaatttgtgtcataactcatg 661

                                                                       
Query: 61  ttgatgaagatgagtttgagttctttggctctgatgtaccccttttcatattggtttgtc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 660 ttgatgaagatgagtttgagttctttggctctgatgtatcccttttcatattggtttgtc 601

                                                                       
Query: 121 ctcagcccttcttctccttccctcctctggtagaggttaggcaggcagagtggactttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 600 ctcagcccttcttctccttccctcctctggtagaggttaggcaggcagagtgggctttct 541

                                                                       
Query: 181 caatttctcagtacctccccatcagaggccaacctgacttgtaggtctttgcctggagag 240
           |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 540 caatttcttagtacctccccatcagaggccaacctgacttgtagatctttgcctggagag 481

                                                                       
Query: 241 ctggttcagtgtaggaggaggaagctgcgttttggcctcagatccagactcttctctgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 480 ctggttcagtgtaggaggaggaagctgcgttttggcctcagatccaggctcttctctgat 421

                                                                       
Query: 301 gcatcatgactatttaaagggatgatgttttcatcatccttcactgtcaccttaaagaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gcatcatgactatttaaagggatgatgttttcatcatccttcactgtcaccttaaagaca 361

                                                                       
Query: 361 gaggaaaagcagcacactgatgctgagacctgttagttcattagaaaccagacaacctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaggaaaagcagcacactgatgctgagacctgttagttcattagaaaccagacaacctgc 301

                                                                       
Query: 421 agaattcctgggttccatggggaaaccaagaaagtacaaagggacaatggagtggggtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agaattcctgggttccatggggaaaccaagaaagtacaaagggacaatggagtggggtaa 241

                                                   
Query: 481 aaaggagaatagcaagagacaggcgatatgaagaagggaa 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaaggagaatagcaagagacaggcgatatgaagaagggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)