BAC Information

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BAC

Clone NameMSMg01-104H02
Chromosome13 (Build37)
Map Location 18,257,621 - 18,257,815
singlet/doubletsinglet
Overlap genePou6f2
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik
Downstream geneVps41, Amph, LOC624044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104H02.T7 (MSMg01no104_h02.b1)MSMg01-104H02.TJ (MSMg01no104_h02.g1)
ACCAG319055AG319056
length719716
length of high quality
(start - end)
44 (71 - 114)191 (73 - 263)
definitionCHROMAT_FILE: MSMg01no104_h02.b1 PHD_FILE: MSMg01no104_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:42 2005CHROMAT_FILE: MSMg01no104_h02.g1 PHD_FILE: MSMg01no104_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAGAGGATTCGCGGAA
TTCCCTTGTTTTCCATCTGCAGGAAATTTTAATGACAGTTGTATGGCTAA
AATGTATCCAAGAAATAACTTCAATTGGACTTGGGGAATAGCCATATGAA
CACCGGTCAGATGTGAGTCTGTACTGACCAGGCTAAGGGGTTCAAAGTCA
TGATAAATATGACCGTATCCCAAAAGGATGTAATACAGGTTGAACATCCC
TAATATAAGACTCCAAAATGCTCGAAAATCTGACTATTAACACAACTCTT
TAAATGGAAATTTCAGCTAACTGATATACTACAACAATCGTATAAAATTG
CCTTCTGGTTAACTGTACCCGCTACATGTTATACAAATTAATTCCATGTC
TAAACTATGTTCCTGTTCCAAGTGTCTCATTATACCCAAGAGACGTGTAT
ACTCACTACTACTTTTTCTACTTGGGCATATGCCATTCTACATTGACAAG
ATTCTTCTCAAACCTGCTCAATGATTCATTTGCCTCCTTTCACTCATTTT
TTTGCCTTAATCTTATTTTGCTCCTCTGTCCCTCGTCTCATTTTTTGCCA
TGAATCTCCCCCAATTTCATCCCCGTCCCAGTCTTTCCGTTTTCTCTTGT
CTTGCTCTATTCCTCGTTCTTGCCCCTACTCCCCCCCTTCCTCGCCCCTT
CCCTACTTCCCCCCTATCA
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGACACAGAAGTCAGTCTGCTACACA
GGGAACACACTCCTTTCCAGTCATTTCTTCTTAATGTGAAGCAGGGTAGC
CCTGATCAGCTCCTTGGAGCTGTAAATAGCATCCTCTAGCTGATTAGCTG
TTTAGAATTATAGATGCTCCAGAAATTAACTGGCCTCAAAAGAATGTGTG
AGTTTTATCCAGGAGTCCACTGGAGAGGCCATTTTCCCGTTCCCATGAAA
ACTAAGGCTTATAGATGAAGCCTCTAAATTACTCCATGACACAAGTTGGC
AGTGGCCTTACCCAATATAGCACAAGACAGCTCATCATCCCGCTTCAGGT
AACATCGACCCGGTCTTCTCTTTATAGGCTTTCTGGCCTGAATTTTACAC
CGGTACTTCCACTGCGTATTATTGCTAATCTCTTTTGTTCCCAGTGTGCT
CTTCTTTCACCCATGCATGCTGATGATCATCTGCATATTCTTGAGCCCGT
CTTGATAACCTCTTCTTTTTTATGTCGCGTCTCCCACCTCCATTGTTATT
TCCTCCCCAGCCTCTGTTGTTACCCCCCCTCTCTCTTTTGTCGCCCTTCC
TGCCCTCCCTCCCCTTTTCTCCACTCCTCGGACACCTCCAAATTCCGTTC
CTCTCTCCCCTCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_h02.g1 MSMg01no104_h02.g1 CHROMAT_FILE:
MSMg01no104_h02.g1 PHD_FILE: MSMg01no104_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:42 2005
         (191 letters)



>mm_chr13_18257421_18258015
          Length = 595

 Score =  342 bits (177), Expect = 6e-99
 Identities = 189/195 (96%), Gaps = 4/195 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgacacagaagtcagtctgctacacagggaacacactcctttccagtcatttcttctt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgacacagaagtcagtctgctgcacagggaacacactcctttccagtcatttcttctt 260

                                                                       
Query: 61  aatgtgaagcagggtag----ccctgatcagctccttggagctgtaaatagcatcctcta 116
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtgaagcagggtaggtagccctgatcagctccttggagctgtaaatagcatcctcta 320

                                                                       
Query: 117 gctgattagctgtttagaattatagatgctccagaaattaactggcctcaaaagaatgtg 176
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgattagctgtttacaattatagatgctccagaaattaactggcctcaaaagaatgtg 380

                          
Query: 177 tgagttttatccagg 191
           |||||||||||||||
Sbjct: 381 tgagttttatccagg 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 595
Length adjustment: 8
Effective length of query: 183
Effective length of database: 587
Effective search space:   107421
Effective search space used:   107421
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)