BAC Information

Click to search

BAC

Clone NameMSMg01-104N23
Chromosome13 (Build37)
Map Location 7,910,742 - 7,911,115
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667611, EG623516
Downstream geneLOC791083, LOC382722, Adarb2, EG666941, Wdr37, LOC100039632, Idi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104N23.T7 (MSMg01no104_n23.b1)MSMg01-104N23.TJ (MSMg01no104_n23.g1)
ACCAG319374AG319375
length717684
length of high quality
(start - end)
672 (44 - 715)606 (79 - 684)
definitionCHROMAT_FILE: MSMg01no104_n23.b1 PHD_FILE: MSMg01no104_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:17 2005CHROMAT_FILE: MSMg01no104_n23.g1 PHD_FILE: MSMg01no104_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTACCTCTGAACCCCATTTTAATGGGGTTATTTGAATTTCTA
GAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCCTATC
AGATTTACGATTGGTAAAAATCCTTTCCCAATCTGTCGGTGGCCTTTTTG
TTTTATTGATGGTGTCTTTTTCCTTACAGAAGCTTTGCAATTTTATGAGG
TCTCATTTGTCGATTCTCGATTTTACAGCACAATATAGTAAAAATGGCTA
TCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCA
ACTCAATTCTTCAACGAATTAGAAGGGGCTATCTGCAAATTCATCTGGAA
TAACAAAAAGCCTAGGATAGCAAGGATAAAAGAACCTCTGGTGGAGTCAC
CATGCCTGACTTAAAGCTGTACTACAGAGCAATTGTGATAAAAACTGCAT
GGTACTGACATAGTGACAGACAAGTAGACCAATGGAATAGAATTGAAGAC
CCAGAAATTCACTTGATCTTCAACAAGGGAGCTAAAACCATCCAGTGGAA
AAGACAGCATTTTCAGCAAATGGTGCTGGCACAACTGGCGGTTATCATGT
AGAAGAATGGGAATTGACCTATTCCTATCTCCTTGTACTAAGGTCAAATC
TAAGTGGATCAAGGAAA
NNCCCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTACATCTGGAAATGTCACAA
TGAATCATGTTGTCATGGAAAATTAATATAGGCTAAAAATTAAACAAATT
TTACTAATTGACTCAATTTTCATTCCAGTAATAAGAATTTAGTGTGAATA
TTTTGTCTTTATTACTGATGTGAGTTGAGGAAAGAATGGTGACAAAATTA
AAATACCATGTATGCATAGTATATGTATATATATTTTATTTGTGTCTGTA
ACCACATGTATATGTACCTATGCATATTATAATAGTATGTGAACATAGTA
TATACGTATTCACTTACTTATATACAACATCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCATCTATCTATGTACACTAAAAAAAATCAC
CATTCATTGGGTAGGAAGATGGCTCATTTGGCTCAGAGCTTAGTAAGGAC
AAGGGTGTGAATTAAAAAATCACAGAACCCATGTAAAAGTGAGATGTGGA
GATCATCTGTAGTCTCAGATCTCTTACATAAAGAGGACATTCAGGGACAA
GAGAATCCCAAGAAGCTTGAGAATCAACTAGCCTGGCAAACAAAGTGAAA
AACAGCAAAGCTAATGATATTTATTGAAGGGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_n23.g1 MSMg01no104_n23.g1 CHROMAT_FILE:
MSMg01no104_n23.g1 PHD_FILE: MSMg01no104_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:17 2005
         (606 letters)



>mm_chr13_7910736_7911741
          Length = 1006

 Score =  688 bits (356), Expect = 0.0
 Identities = 367/374 (98%), Gaps = 6/374 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtacatctggaaatgtcacaatgaatcatgttgtcatggaaaattaatataggctaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtacatctggaaatgtcacaatgaatcatgttgtcatggaaaattaatataggctaaaa 321

                                                                       
Query: 61  attaaacaaattttactaattgactcaattttcattccagtaataagaatttagtgtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attaaacaaattttactaattgactcaattttcattccagtaataagaatttagtgtgaa 261

                                                                       
Query: 121 tattttgtctttattactgatgtgagttgaggaaagaatggtgacaaaattaaaatacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tattttgtctttattactgatgtgagttgaggaaagaatggtgacaaaattaaaatacca 201

                                                                       
Query: 181 tgtatgcatagtatatgtatatatattttatttgtgtctgtaaccacatgtatatgtacc 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgtatgcatagtatatgaatatatattttatttgtgtctgtaaccacatgtatatgtacc 141

                                                                       
Query: 241 tatgcatattataatagtatgtgaacatagtatatacgtattcacttacttatatacaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tatgcatattataatagtatgtgaacatagtatatacgtattcacttacttatatacaac 81

                                                                       
Query: 301 a------tctctctctctctctctctctctctctctctctctctctctcatctatctatg 354
           |      |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  atctctctctctctctctctctctctctctctctctctctctctctctcatctatctatg 21

                         
Query: 355 tacactaaaaaaaa 368
           ||||||||||||||
Sbjct: 20  tacactaaaaaaaa 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)