BAC Information

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BAC

Clone NameMSMg01-105A16
Chromosome13 (Build37)
Map Location 28,731,020 - 28,731,374
singlet/doubletsinglet
Overlap genenone
Upstream genePrl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
Downstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105A16.T7 (MSMg01no105_a16.b1)MSMg01-105A16.TJ (MSMg01no105_a16.g1)
ACCAG319500AG319501
length725698
length of high quality
(start - end)
37 (106 - 142)355 (76 - 430)
definitionCHROMAT_FILE: MSMg01no105_a16.b1 PHD_FILE: MSMg01no105_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:32 2005CHROMAT_FILE: MSMg01no105_a16.g1 PHD_FILE: MSMg01no105_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAAATTAGCGGCGCTAAAAGACTACTATTGCGCATGGAGGGGCGGAA
TTCAAAGGTCTCGCTAAACTGCCTCTTGGATCTTTCTGTGGACTGGGCTC
TCTGCTGGGCTCTCTGCTGGGATCTCTCTCTCTCTCTCTCTCTCTATCTC
TCTCTCTCTCTCTCTCTCGGTGTATGTGAGTGTGAAGAGGAGGAGAGAGG
AGGAGGAGAGAAAAGGGAGAAAAAGGGAAAGAGAAAGAGAAGAAAAGAGA
GTAAAAATAGAGAATACTTGGAAAAATAGGGATATAGAAAAAGAAAAAAG
GAGAGGGAAAGAGAAAAATATAAAGAAAAAAAAAAAGAAAAAAGAGAGAG
GGAGAGAGGGAGAAAGAGAAAGAGGAAGAGGAAGAGAAGAAGCAGTAAAA
AATAAAAAAAAAAAAAAAAAAAAAAATATCGCACGAAAGAAAAAACACAT
AAGAGAAATAAAAAAAAAAAAAAAAAAAATAGAATGCAAAAGGGGATGGA
AAGAAGAAAAAAAAGGGAAAAAAAAAAAGAGGAAAAAAAAAAAAAAGAAA
AAATAAGAAGAAGAGAAAGAAAAAGGGAGGAGAAACGAAGTAAGGGGGAA
GGAAGGAACGGAGAGTGAAAGATGTAAGAAGAGAGTGAAGGAAAGGGGAA
GAAGAGGAAAGAAAAGGAGAAAGAAGAGGAAGGGAGGAAGAGGAAGGAGA
AATAAAATGGAAAAAATAGAAAAGA
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGGCTTTCAGAAGGGCATTGCCA
GTCACAGGTACCACCTACACTCCGCTCCAAAGGAGCAGATAGTAACAGTG
AGCAGGGCTGCCTGACGCAGGGAGGGAGACCCAGGACCAGCAATGAGCCG
GTGGGAGTGAGGAGTGAACAAAGACTAGGTGTGGAAATGGAATTAGATCT
GAATTCAGATCAGGTCAAGAGGCATCGGCCCACTCCCTTCTCTTGGTGTT
AGACACGGGGTTAAAACATACACTAATGGTCCTGACCGCTGAACCAAGTG
GGCTACCTAACTCCATCCACACTCATCCTTGTGAGCTACACAGCTATGGG
GCATTGTTGTGAGCATCTTGAGCCCTGAACCAAAAGCCAAATGCATGGGC
AAGGACTATATCACTGTCAAACAAATTATATCATACCACACATATCATAC
TTAATCCCAGGCCAAGTACATCTGGGCTCCACACTTCCCAAGATTCTCTA
ATTTGCTATTTTAGCATATTTGTGCCTTGGCGTCCCCAGGAGCACTTTTG
TGATGATAGCCGTGCCTTCTCTCCTTTGACTAATGCTTAAATTTCAAATT
TCAAAATGTTGTATAGCACTTCCAAAACTACTCCAAAAGTCCAGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_a16.g1 MSMg01no105_a16.g1 CHROMAT_FILE:
MSMg01no105_a16.g1 PHD_FILE: MSMg01no105_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:32 2005
         (355 letters)



>mm_chr13_28730820_28731574
          Length = 755

 Score =  636 bits (329), Expect = 0.0
 Identities = 349/357 (97%), Gaps = 4/357 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggctttcagaagggcattgccagtcacaggtaccacctacactccgctccaaaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| 
Sbjct: 201 tgtggctttcagaagggcattgccagtcacaggtaccacctacacacagctccaaagga- 259

                                                                       
Query: 61  cag--atagtaacagtgagcagggctgcctgacgcagggagggagacccaggaccagcaa 118
            ||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 -agggatagtaacagtgagcagggctgcctgacccagggagggagacccaggaccagcaa 318

                                                                       
Query: 119 tgagccggtgggagtgaggagtgaacaaagactaggtgtggaaatggaattagatctgaa 178
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 319 tgagccggtgggagtgaggagtgaacaaagacaaggtgtggaaatggaattagatctgaa 378

                                                                       
Query: 179 ttcagatcaggtcaagaggcatcggcccactcccttctcttggtgttagacacggggtta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttcagatcaggtcaagaggcatcggcccactcccttctcttggtgttagacacggggtta 438

                                                                       
Query: 239 aaacatacactaatggtcctgaccgctgaaccaagtgggctacctaactccatccacact 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaacatacactaatggtcctgaccgctgaaccaagtgggctacctaactccatccacact 498

                                                                    
Query: 299 catccttgtgagctacacagctatggggcattgttgtgagcatcttgagccctgaac 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 catccttgtgagctacacagctatggggcattgttgtgagcatcttgagccctgaac 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)