BAC Information

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BAC

Clone NameMSMg01-105C18
Chromosome13 (Build37)
Map Location 27,756,296 - 27,756,884
singlet/doubletsinglet
Overlap genePrl7a2
Upstream geneLOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1
Downstream geneRP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105C18.T7 (MSMg01no105_c18.b1)MSMg01-105C18.TJ (MSMg01no105_c18.g1)
ACCAG319597AG319598
length710697
length of high quality
(start - end)
565 (49 - 613)589 (74 - 662)
definitionCHROMAT_FILE: MSMg01no105_c18.b1 PHD_FILE: MSMg01no105_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:43 2005CHROMAT_FILE: MSMg01no105_c18.g1 PHD_FILE: MSMg01no105_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATCAGTGCAATCTACTCCAAAAAAAAAAAAACCAACAACCA
AAAAAACAAACAAACAAACAAAAAAACCCAAAACAAACAAAACAAAACAA
AAAAAACCCAAAAAACTCAAAGAAAATATCCACATGATCATTTCAATAGA
TGCTGAAAAAGCATTTGACAAAATTCAACATCCCTTCATGTTAAAAATCT
TGGAAAGATCAGGAATTCAAGGCCCCAATATTATCATATTAAAAACAGCA
AACCAGTAGCCAACATCAAACTAAATGGAGAGAATCTTGAAGCAATCCCA
TTAAAATCAGAGACTAGACAAGGTTGACGACTCCCTCCCTATCTATTCAA
TATAGTACTTGAAGTTTTAGGTAGAACAATTGGACAACAAAAGGAGTTCA
AAGCAATAAAAAATTGAAAAGGAAGAAGTCAAAATATCACTATTTGCAGA
TGATATTATAGCATAATTCAGTGACCCCAAAAGTAACACCAGAGAATTCC
TAAACCTGAAAAACAACTTCAGCAAAGTGGCTGGATATAAAATTAACTCA
AACAAATCAATAACCTTTATTACTCAAAGGATAAACAGGTTGGGAAAGAA
ATTAGGGAAACAACACCCTTCACAATAGTCACAAACAATATAAAATACCT
TGTTGTGACT
CACATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGTCTACTCCCTCTTTCTTGACACTA
ACTGGCCTTGAACAGAGAACATACAGTCCTCAGGAACACAGAACCTGTTT
CTTTTCTAATTCAGGATTCCCTGTGAATAAACTTCTGCACCAGAATCCTT
TAAATATGATTTAAATGTGATGCAAGTATGGTTTCCAGCATTCTGTGAGA
AGCTAATATGTTGTTGCTGCTCCTTGCCTTTTCCCTCTCTTGGATTATCA
CACTTTAGATTTAGTCCACTCATTCCTTCTGACTCACTGCCAGGCACTTC
TCTATTGGATTTCTCTAGTGTGCAACTGACACTGGCTCCACAGAAGCAAA
ATCATGGGATCAGAATTCTTCCCGGGACACAGCTATTAAAACGTTATGTT
GCAAGTACAAAGATTGTTTTTAACTAAACAAAAACAATTTTTTAAAAAAC
AGATAAAGTCCTACAGATTTTTTTTTAGCAAACCAGTGATTTGATGAAGC
TGTCCTCTGCTTTTGAACAGCTGACATTTTCTTTTACCTGTAGAGCTGTA
GAGGTGTATCTCTTGAAACTGGAAATTTTTTTCAGTGCAAAAGCAAAGTC
ATTAACATGAAGGCTTTGGGGAAAAAAAGATGGACATAAAAGAAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_c18.g1 MSMg01no105_c18.g1 CHROMAT_FILE:
MSMg01no105_c18.g1 PHD_FILE: MSMg01no105_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:43 2005
         (589 letters)



>mm_chr13_27756096_27757084
          Length = 989

 Score = 1139 bits (589), Expect = 0.0
 Identities = 589/589 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctactccctctttcttgacactaactggccttgaacagagaacatacagtcctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtctactccctctttcttgacactaactggccttgaacagagaacatacagtcctcag 260

                                                                       
Query: 61  gaacacagaacctgtttcttttctaattcaggattccctgtgaataaacttctgcaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacacagaacctgtttcttttctaattcaggattccctgtgaataaacttctgcaccag 320

                                                                       
Query: 121 aatcctttaaatatgatttaaatgtgatgcaagtatggtttccagcattctgtgagaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcctttaaatatgatttaaatgtgatgcaagtatggtttccagcattctgtgagaagc 380

                                                                       
Query: 181 taatatgttgttgctgctccttgccttttccctctcttggattatcacactttagattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatgttgttgctgctccttgccttttccctctcttggattatcacactttagattta 440

                                                                       
Query: 241 gtccactcattccttctgactcactgccaggcacttctctattggatttctctagtgtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtccactcattccttctgactcactgccaggcacttctctattggatttctctagtgtgc 500

                                                                       
Query: 301 aactgacactggctccacagaagcaaaatcatgggatcagaattcttcccgggacacagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgacactggctccacagaagcaaaatcatgggatcagaattcttcccgggacacagc 560

                                                                       
Query: 361 tattaaaacgttatgttgcaagtacaaagattgtttttaactaaacaaaaacaatttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattaaaacgttatgttgcaagtacaaagattgtttttaactaaacaaaaacaatttttt 620

                                                                       
Query: 421 aaaaaacagataaagtcctacagatttttttttagcaaaccagtgatttgatgaagctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaacagataaagtcctacagatttttttttagcaaaccagtgatttgatgaagctgt 680

                                                                       
Query: 481 cctctgcttttgaacagctgacattttcttttacctgtagagctgtagaggtgtatctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctctgcttttgaacagctgacattttcttttacctgtagagctgtagaggtgtatctct 740

                                                            
Query: 541 tgaaactggaaatttttttcagtgcaaaagcaaagtcattaacatgaag 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaaactggaaatttttttcagtgcaaaagcaaagtcattaacatgaag 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)