BAC Information

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BAC

Clone NameMSMg01-105D17
Chromosome13 (Build37)
Map Location 38,116,272 - 38,116,520
singlet/doubletsinglet
Overlap geneCage1
Upstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1
Downstream geneRiok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105D17.T7 (MSMg01no105_d17.b1)MSMg01-105D17.TJ (MSMg01no105_d17.g1)
ACCAG319642AG319643
length724858
length of high quality
(start - end)
253 (72 - 324)---
definitionCHROMAT_FILE: MSMg01no105_d17.b1 PHD_FILE: MSMg01no105_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:48 2005CHROMAT_FILE: MSMg01no105_d17.g1 PHD_FILE: MSMg01no105_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATATGTTCCACGATTACTCCCCTGTCTGTGACGGTGAGAAG
GCTCCCCATGCCCCATTTATTTGCAAATTAGATGGCAGTGTTTGAAAGAG
AACCTAACTTACCCATGTTGATTTCTAGAAACCAGCATTTCAAAGATGAA
TTTGAGTTTCTCAAGATTGCTTGTTCTTTCTCCATGGAATTTAGTATTTT
TTTTTCTCAGTAGTCAGTAGAGAATAGTCTCTTGAGAATCTGTTGTGTAC
CAGAACAGGCTATGTAATGGCTATATGGTGTTAAAAACAAACAAGAAAAA
CACATGGCTCTCGTCTTCATGAACATAACATCCTCATAAGAGACCTAGAG
ATTAGCAACTGAATCACACAGATGAATGATTGTACTTGACCCCTATAGCT
ACACAGTGGAATGTTTGCCTCTGCTGAGGGCTCTTCTCCAGTCATAGGCC
CTGGCGAGGCTTCCTTGGTGTAATTCTGTATAGTTGTGACGTCGTAAGCT
TTCCATCTCCATTAGCCGCGTACCTGAACTCCCTGTACCTGCACGGTCCG
TGATACCTACTACCCGCGTTAGAACGCCCATGTGCTCTGTACACACCTCT
ATTACATTATTATCGCCCACAGCCAAACAAGACCATAGCGCCGCCTTTCC
TAGCGCTATCCAACAAGCATACCC
AATAGCAGTGCGAGGCCTGGTGGGCGCCTGTTCGACGAAGGGAGGGCGAC
TTACAGAAGGCCCCGTGGACTTCTAGGACATGATAATGGTTCACCACGAT
CCATGGCTTTATAGACTTGTTGTTTTTACCTATGTCCGCGTTGGCGAGTG
GGTGTCGCCCGTCCCCCTCTCCTGCTCCCTTCCTTGCCTCTCTTCATGTC
CTCCTTGCACCCCTATACTTGGACCGATCACCTCTACCGTACCTTTACAT
CTTATCATCACTACGGGAACGGGAATTCGTCGTGCGCGGCCGTTCCGCGT
TCGGCTAGGCCGTGCGTCGCGCCCTATCTCGGCGTATGTCCCGGATGCGG
GAGCGGCGGAGTGGGGTGAACGTCGAGTAGAGGGCGTAGGAACGGCACGC
GGGGAAGGTGGGGGCGGGGAGAGGAGATGGGCGGAAGAAAGGAGCGAGGC
GCGGTCACACAGGGAAAGGATGGAAGGAAGGAGAAAAGAGCATACGCCGG
AGAGCGCGGTGCAGAGGGTGGACCGGAGACGGGGCATGCATGGGGTGTAA
AGCCAGAGCATCATCGAGACGAGAGAGCGAAATATAAGGCAGGAAAATGG
CAGGAGCCGGCAAGTATTCATCGCAGAGAACCACCCCCGTTAGGTGACAT
TACGACCGCCGGAGCGCGCTTGTACGGCGCAGTGTCCCGCCTGATTGATC
GTAGGACGAGTTTGTGCGCAGTCGCGCGGCCCCGAATGCAAGGAGACTCG
TTCCGTAGTTGCGGGGTACGGGCGCGCCGCTAACGAGAAACCACCAAACA
CGCGAGGAGCACGGGATAGTGACGGCGACGCTGGAGCAGGCGCGCCCGAT
ATGATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_d17.b1 MSMg01no105_d17.b1 CHROMAT_FILE:
MSMg01no105_d17.b1 PHD_FILE: MSMg01no105_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:48 2005
         (253 letters)



>mm_chr13_38116072_38116724
          Length = 653

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attactcccctgtctgtgacggtgagaaggctccccatgccccatttatttgcaaattag 60
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 449 attactcccctgtctgtgatggtgagaaggctccccatgccccatttatttggaaattag 390

                                                                       
Query: 61  atggcagtgtttgaaagagaacctaacttacccatgttgatttctagaaaccagcatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atggcagtgtttgaaagagaacctaacttacccatgttgatttctagaaaccagcatttc 330

                                                                       
Query: 121 aaagatgaatttgagtttctcaagattgcttgttctttctccatggaatttagtattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaagatgaatttgagtttctcaagattgcttgttctttctccatggaatttagtattttt 270

                                                                       
Query: 181 ttttctcagtagtcagtagagaatagtctcttgagaatctgttgtgtaccagaacaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttttctcagtagtcagtagagaatagtctcttgagaatctgttgtgtaccagaacaggct 210

                    
Query: 241 atgtaatgg 249
           |||||||||
Sbjct: 209 atgtaatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)