BAC Information

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BAC

Clone NameMSMg01-105O07
Chromosome13 (Build37)
Map Location 26,885,365 - 26,885,830
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939
Downstream geneLOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105O07.T7 (MSMg01no105_o07.b1)MSMg01-105O07.TJ (MSMg01no105_o07.g1)
ACCAG320126AG320127
length694690
length of high quality
(start - end)
469 (45 - 513)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no105_o07.b1 PHD_FILE: MSMg01no105_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:40 2005CHROMAT_FILE: MSMg01no105_o07.g1 PHD_FILE: MSMg01no105_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCCTGACCTGATGTGCAGCCTGAAGATGGTATTTTGTCCATCAG
TCCTCTCCAGGTTGCCACTACCTAATTTCCTCTCTACCTCTCCAGAGCCA
GGGATCATGCTGTTCTCTGTTTTCTTGTTATTACTTTCTCTTTGGAAGAG
TCCAAATCAAGATATTTTTCTAATACTGTTATTTAAAAGTTGTTTCTCAT
TTTTTCAAAGTGTCATCAGCTAATAACTAAACAAATGATTCTTGTCAGTA
TATGTGAAGATAAGTAACATGACTTGAATAAGGAAAGCACCATTAGAAGA
ATGGGCTATCCCAGCAACAGGAAGCAAGAACTGTAGAGAGGGCAACATCA
TGAGCTGGGATTACTCGGTGGGAGAGGTTACACTTCATTTTTTATCTATT
CTTCTTCCAGAGTTTCATGTAATACACTTCACATTATTACAGGGCTGAGC
CTGATTTGTCCAGCAAGTCAGGTGCTTCCACCGGCTTTATCTACTTTCAT
ATTCCCAGAAACAACAACATTATGTGAAGACATATATGAGAGCAGTTTAG
TAATGTTGGTTAACATAATATGATAGCATCCTGTACCCCAAACCCTATTT
AAATAATTCATATTCCTTCTCCTATAGATATTGCCCCACTCCCA
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGTAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGTGGTTCCTCATAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCCTATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GATAGATCCTAGATGCCCCTCACCAGAGGAATGGATACAGAAAATGTTGT
ACTCCTACCCAATGGACTACTACTCAGTTATTACAACGAATGAATTTATG
AAATTCCTAGCCAAATGTATGGACCTGGAGGACACCCTCACGAGTGAGGT
AATACATTCCCAAAGAAACTCACCCAATATGCATTCACTGATAAGTGCCA
ATTATTCCTCCATTCCGGTATCCCTTAGATACAAGAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_o07.b1 MSMg01no105_o07.b1 CHROMAT_FILE:
MSMg01no105_o07.b1 PHD_FILE: MSMg01no105_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:40 2005
         (469 letters)



>mm_chr13_26885158_26886030
          Length = 873

 Score =  835 bits (432), Expect = 0.0
 Identities = 456/466 (97%), Gaps = 4/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttccagcctgacctgatgtgcagcctgaagatggtattttgtccatcagtcctctccagg 67
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 673 ttccagcctgacatgatgtgcagcctgaagatggtattttgtccatcggtcctctccagg 614

                                                                       
Query: 68  ttgccactacctaatttcctctctacctctccagagccagggatcatgctgttctctgtt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttgccactacctaatttcctctctacctctccagagccagggatcatgctgttctctgtt 554

                                                                       
Query: 128 ttcttgttattactttctctttggaagagtccaaatcaagatatttttctaatactgtta 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttcttgttattactttctctttggaagagtccaaatcaagatatttttctaatactgtta 494

                                                                       
Query: 188 tttaaaagttgtttctcattttttcaaagtgtcatcagctaataactaaacaaatgattc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttaaaagttgtttctcattttttcaaagtgtcatcagctaataactaaacaaatgattc 434

                                                                       
Query: 248 ttgtcagtatatgtgaagataagtaacatgacttgaataaggaaagcaccattagaagaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttgtcagtatatgtgaagataagtaacatgacttgaataaggaaagcaccattagaagaa 374

                                                                       
Query: 308 tgggctatcccagcaacaggaagcaagaactgtagagagggcaacatcatgagctgggat 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgggctatcccagcaacaggaagcaagaactgtagagagggcaacatcatgagctgggat 314

                                                                       
Query: 368 tactcggtgggagaggttacacttcattttttatctattcttcttcc----agagtttca 423
           |||| ||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 313 tacttggtgggagaggttacacttcattttttatctattcttcttccagagagagtttca 254

                                                         
Query: 424 tgtaatacacttcacattattacagggctgagcctgatttgtccag 469
           ||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct: 253 tgtaatatacttcacattattacagggttgagcctgatttgcccag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 873
Length adjustment: 10
Effective length of query: 459
Effective length of database: 863
Effective search space:   396117
Effective search space used:   396117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)