BAC Information

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BAC

Clone NameMSMg01-106C08
Chromosome13 (Build37)
Map Location 24,643,969 - 24,644,464
singlet/doubletsinglet
Overlap genenone
Upstream geneHist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
Downstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106C08.T7 (MSMg01no106_c08.b1)MSMg01-106C08.TJ (MSMg01no106_c08.g1)
ACCAG320310AG320311
length1,2661,342
length of high quality
(start - end)
673 (85 - 757)513 (87 - 599)
definitionCHROMAT_FILE: MSMg01no106_c08.b1 PHD_FILE: MSMg01no106_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:09 2005CHROMAT_FILE: MSMg01no106_c08.g1 PHD_FILE: MSMg01no106_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTTNNNNNAACATTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTCATATGTACCCTAATCTGTTAATATGTGCTTGACCTATA
AAACTTATACAGCTATACCTTATTATTTCATTGTTGAATACTTGGGCTTT
CTAATTAAGGGCTAACATAAATAATGTGGTTGTACATCCCTGTACACTTG
TTTTGAAGAACAGACGCATACCCTTGTCTAGTTTGGAGACTAGAATAACA
TTGGGAGGCATGGCCCATGTGTACTTTCTGGTTCTCCAGACACAGCCACA
GTGTTTTTCAGTGTGACAGAAAAACATTGCATGCCTGTAGTAACTTACCA
GAGTTTCTATTGTCACCCCCACCTCCCACTCCTTGCAACAACATTTGGTA
TTTTCGATTATTTAAATTTTTTTTTTTTGTTTTGTTTTGTTTTTTTCTTA
GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTACTCTGTAGT
CCAGGCTGGCCTTGAATTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGC
TAGGATTAAAGGCGTGTGCCACCACTGCCCAGCCGGTTATTTAAATTTAG
TTAATCTAGTGGCTGCAGGCATATCTTGTTATAGTTTTATTTTTCATTTC
CACAATCACTAGAGATACTTGACTCCCTTTAAAAATTTTATTGATAATTT
TAATATTCTCTTGTGTGAAATGCCTGTCTAAACCTTTTTAGCCTATTTCC
CTTTTAACCATGAATTTGCAGAAATTCTTATATACTCTGCAAAAAATTAC
TTTGTAATTTGCCCAAGCAAATGGGTCCTTACTTTTTATTCTTTTATGGT
GTTTTGAAATGAATATGTTATCATCTTAATACAACTTAGATATTGATAAT
TTTCTTTTGCGGTACTTTAATGAGTGTTGTTGTTGTTGTTGGGGATGCAG
GATTACTCACTTTATTTTTTTGACTCTTTTATTCAATTCTTTTTTCTTCT
TTTCATATTTTTCTATACACTTATTTTACTTCTTTTTCTCTTCATCTTAT
CTTACATATTTTTACTCTTTTTCCTTCCATTTTTTCTTTTTTCTACTTTC
TTTTCTCTTCTTTCTCGCTATCTCCTATTTCTTTTTTCTTACTTTTTCTT
CTTTTTTCACCTTCGATTATTCTCTCTTCATTCATCTTCTCTTCTTTTTC
TATACATCATTCCNTAATACTATTCTATACTCCTATTTATTNTCTTTATA
CTTTCCTCTCTTATTT
NCCCATATTCTTTNNAAGCATGGATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTCTTATCCCCTGGGCGATG
AAGCGTGACCCAGCGAGCCCTGTTTCCCACTGACTTTGGAACTGCTCAGT
GTGGTTTAGCTCGCACTGTTATTTTTATGATCCCATGTCGTCTTGGAACA
GGAGTGATGTGTGTCATCTGTAAAGCAGAGTTGCAGGACTCAAATGCTCT
CGGGAGCCAGGAGGGTAAGATGAATGAACCAAGGCGGAGTGTCAGGACAT
GTGGCCGCAATCCCTCAGTCTTCAGGGGACTGACAGGAGATGTGCTTCTG
ACATCTCTCCTTGTGTATGCACGGTGTGCTACGGCTGAGGGTAGTTCAGC
AGAAAAGCACTTGCCTAATTTGCACAAGGCCCTGGTTGGTCTACAGGTCC
AATCAATCAGCCAACCAGTCAGTCAGTGATAACATAGAGAGGTTAATCCC
TATTCCACTTTACACAAGGCATCTCACAGAAATGCTGGTCTGGGCTTGCC
ACATCTTTAAGAGATCTCTGAAAGCTGCGTTTACATGTGAAGCCTCATAG
CTTAAAGACAACAGCAATAGCTCAAATTTCAATTTTCTGTGAGCCAACTA
AACCACCACCAGGTCAGAGGCATTATTTTAAAACACCCGCAGATGTGGTC
CTGAGGGTTGCTGTCAGCACATCAGAACTAGGAAGCGGGAGATGTCTCCC
CACCCTGCCACCTTAGTTTCCTGCAAAGCAGACTTACAATTCCCATTACT
GCGCCTCCATCTGAACGAACTCATTATGGGAAGACAGTTTTCTAGGTTGA
ATGCTCTGTGCGTTGTTTGCCCTTTTTTTTTTTTTCCCTATTATTTATCC
TCACCCTTAACCTAAATGTTCAGGTGGAAAAAAAGGGAATTTTAAAGGTT
CGGGTAAAATAACTTAACCCAGCACCATGCTTGCTTTCGAAATTATGTGC
TTGGCAAGAATAACTTTAAGTGCCTGTTCAAAATCCACCTTTGAAAGCTT
TGCCGGGGTAGTGGTTTCTTTCTCAGTACATCCTCTCCTCAATGCGAAAT
GTTTTATATATCTTTTTTCTTCATTTTACTAAAATTTTATATAAACGGCG
CGGTCCTCCCCTCCCTGGCTGAAATCCTGTGTTGTGTCGTTGTGTATTCT
CCATTTTGTTCCNACTGTTTCTCCTCCTCCTTCTCNCTACTATCATGTGA
TATTACTCCGTGCCTACCTGTACTTCCTCTATAAACGTGTCTGTTGTGCT
CTCTACACTCTTTGCCTAAATTTGATCACAACATCTCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_c08.g1 MSMg01no106_c08.g1 CHROMAT_FILE:
MSMg01no106_c08.g1 PHD_FILE: MSMg01no106_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:10 2005
         (513 letters)



>mm_chr13_24643969_24644881
          Length = 913

 Score =  913 bits (472), Expect = 0.0
 Identities = 490/496 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccctgggcgatgaagcgtgacccagcgagccctgtttcccactgactttggaactgct 60
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 496 tcccctgggcgatgaagcgtgacccagcgagaccagtttcccactgactttggaactgct 437

                                                                       
Query: 61  cagtgtggtttagctcgcactgttatttttatgatcccatgtcgtcttggaacaggagtg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 436 cagtgtggtttagctcgcactgttatttttatgatcccatgccgtcttggaacaggagtg 377

                                                                       
Query: 121 atgtgtgtcatctgtaaagcagagttgcaggactcaaatgctctcgggagccaggagggt 180
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 376 atgggtgtcatctgtaaagcagagttgcaggactcaaatgctctcaggagccaggagggt 317

                                                                       
Query: 181 aagatgaatgaaccaaggcggagtgtcaggacatgtggccgcaatccctcagtcttcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aagatgaatgaaccaaggcggagtgtcaggacatgtggccgcaatccctcagtcttcagg 257

                                                                       
Query: 241 ggactgacaggagatgtgcttctgacatctctccttgtgtatgcacggtgtgctacggct 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 256 ggactgacaggagatgtgcttctgacatctctccttgtgtatgcacagtgtgctacggct 197

                                                                       
Query: 301 gagggtagttcagcagaaaagcacttgcctaatttgcacaaggccctggttggtctacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gagggtagttcagcagaaaagcacttgcctaatttgcacaaggccctggttggtctacag 137

                                                                       
Query: 361 gtccaatcaatcagccaaccagtcagtcagtgataacatagagaggttaatccctattcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gtccaatcaatcagccaaccagtcagtcagtgataacatagagaggttaatccctattcc 77

                                                                       
Query: 421 actttacacaaggcatctcacagaaatgctggtctgggcttgccacatctttaagagatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  actttacacaaggcatctcacagaaatgctggtctgggcttgccacatctttaagagatc 17

                           
Query: 481 tctgaaagctgcgttt 496
           ||||||||||||||||
Sbjct: 16  tctgaaagctgcgttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)