BAC Information

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BAC

Clone NameMSMg01-106G11
Chromosome13 (Build37)
Map Location 81,693,468 - 81,693,917
singlet/doubletsinglet
Overlap geneGpr98
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106G11.T7 (MSMg01no106_g11.b1)MSMg01-106G11.TJ (MSMg01no106_g11.g1)
ACCAG320499AG320500
length7491,393
length of high quality
(start - end)
44 (75 - 118)445 (84 - 528)
definitionCHROMAT_FILE: MSMg01no106_g11.b1 PHD_FILE: MSMg01no106_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:46 2005CHROMAT_FILE: MSMg01no106_g11.g1 PHD_FILE: MSMg01no106_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACAGCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAAGAGGA
TCCGCGGAATTCTTAAATCCCGTTGATCCCTCTCAACATAAGGCTCAGAC
ACTGAACCACAGATGGTAGGTCTGTACACAGGAATTTTTCTTTCATGTGT
AACAAATTAACAGGTAGGTTCAGAAAATTACTGAATACTACTTACAATAT
AACCCTTGAGAATAGCTATAATGAACAAAGAATACTATATTGTACATAGA
GTTCTACTACCAACAGAATCCCCTTTGGAATGCCAGACTGGTTTTGTTAC
TGATTTACAGACGATATTGTTCTCCTGTCTGAAGTCTTCCTTGAGTCTGT
CGTTTATGTACAGCATAACCATCTGCAATGCTTTCTGGTACTCCATCATC
TTATATTGATCTTATTACCCCCCACTCCTATTCGGTTATCGCTTGACTCC
CTACCACATCTTTACCATCCTAGACGAATCACATCTAAACCCACTCGTAT
TATCTCCTTGTACTTTTTTTTCACTGCCCCTAAACCCATTACGCTCGACT
CTGTCCCTTTCCCTTTTTTCATATCATCCTCCACACTCTTTACACTTCTT
CCCTCTTTCCCCTCGCTTTCCCTCCTCTTCTTACTTTTTTCTTTCGCCCC
TTCATCTTGTCTCCCCTACTATTCTTCTCACCTTACATATAATTTCTTAC
TTGAAGCTATTTTCAAACCAGTCACCCTCGTCATCCATTTTGCACGTTG
TTTTATACATGGAGNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTCGTTTAGTGCCACTGTTTCCCAGTTATA
CGTGCAAGGCTGCCCTTTTCTCTGTATGACAGAGAGTCACATAAAGAGCC
ATAGTTATTACCCAAAATATGTGCTGTTTGTGTTGACAGGCAGGCTTACG
GTTGCATTGCCATAAGTTCTTAGTCATTACTTATTTCATTGTTATATTGT
AGTATGGTGGAGAACTTCAGACTTCACAAATATACACAGAAACTATTTAG
ACTTGTCAGTGATTTTATGAATGTGCCGGTTCCACATATAAAAAGATTGG
AGAAGTCTTTATTTACTCTATGCCTCTTATGACCTTGAATTTAATAGCTA
CTTGGTTTATTTTCAGAAATATTGAAAGTGACCATAATTACTTTTATGGG
TTTTTTATTTATTATTTTTGAATAATATATATTCAAAATATAATATATAT
TATTATATATATTATATATGATACTGGATTATATTAGGCTTTTTTCTCTC
TTTGTTTCTTTCTTTCTCTGTTCTCTTTAAACTTCCTCTTTTTTTCTTTT
TTTCCTCTCTTTTTCTTCCTTGTCTACATTATTTCATTTTCTATTTTTGT
CTCTTTTTTTATCTTCTTTCTACTTTCTCTATTCCTTTTTCTTTCTCTTT
TTTTTCTTTCTTTTTCTCTTTCTCTTCTTTTTTTTCTTCTTTTATCACTT
TTCCTCTTTTTTCTTCTCTCTTTTTTTTTTCCATTTTTTTCTTTTTTTTT
CTTTTACTTCTTTCTCTCCTCTTCTTATTTTTTCTTCTTTTTTTTTTCTC
CTTTCTATCTTCTTCTTTTTTTCTCTTTTTTCTTTTTTCCTTTTTTTTTT
TCTCTCTATTATTTTATCTATTCTTCTCTCTTTTTTTTTTCTTTTATTTC
TTTTCCTCTTTCTCATTCCTTTTTTTCTTCTTCTTCTTACTCCTCTTATT
TTCTCTTTTTTCTCATTTTTTTTTCTTCTTCTTTTTTTCTTTTTTTTTTT
TCTTCTTTTTCTTTTTCTCTTTTTTTTCTTTTTACTTCCTATCCTCCATT
TTCTTCTCTCTTACTTTTCTTTTCCTTCTCTTCTTTTCTTTCCTTCTCCC
TTTCTTTCTATTTCTTTTCTTATTTCCTCCCTTTTTTTTCTTTTCTTTTA
TTTCTTTTTCTTCCATCTTTCTTTTTTTCTTATTCTTCTTCTCTTTCTTT
TCACTTTCTTTTTTTTATCATTAATATTATTATATTCTTTCTTCTCTTTA
TTATTTTTCCTTTTTTTTATCTCTTTGCTTTAATCTTTTTCTATCTCTTT
ACTCTTCATTCATTTTTCAAATTCTTTCCAACTTTTCTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_g11.g1 MSMg01no106_g11.g1 CHROMAT_FILE:
MSMg01no106_g11.g1 PHD_FILE: MSMg01no106_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:47 2005
         (445 letters)



>mm_chr13_81693350_81694195
          Length = 846

 Score =  764 bits (395), Expect = 0.0
 Identities = 436/451 (96%), Gaps = 7/451 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtttcccagttatacgtgcaaggctgcccttttctctgtatgacagagagtcacata 60
           ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||
Sbjct: 568 actgtttcccagttatacgtgcaaggctgcatttttctctgtatgacagagagtcatata 509

                                                                       
Query: 61  aagagccatagttattacccaaaatatgtgctgtttgtgttgacaggcaggcttacggtt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aagagtcatagttattacccaaaatatgtgctgtttgtgttgacaggcaggcttacggtt 449

                                                                       
Query: 121 gcattgccataagttcttagtcattacttatttcattgttatattgtagtatggtggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gcattgccataagttcttagtcattacttatttcattgttatattgtagtatggtggaga 389

                                                                       
Query: 181 acttcaga-cttcacaaatatacacagaaactatttagacttgtcagtga-ttttatgaa 238
           |||||||| || ||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 388 acttcagatct-cacaaatatacacagaaactatttacacttgtcagtgaattttatgaa 330

                                                                       
Query: 239 tgtgccggttccacatataaaaagattggagaagtctttatttactctatgcctcttatg 298
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgtgccagttccacaaataaaaagattggagaagtctttatttactctatgcctcttatg 270

                                                                       
Query: 299 accttgaatttaatagctacttggtttattttcagaaatattgaaagtgaccataattac 358
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 269 accttgaatttaatagctacttgatttattttcagaaatattgaaagtgaccataattac 210

                                                                       
Query: 359 ttttatgggttttttatttattatttttgaataatatatattcaaaatataatatatatt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttttatgggttttttatttattatttttgaataatatatattcaaaatataatatatatt 150

                                          
Query: 419 attatatat--attatatat--gatactgga 445
           |||||||||  |||||||||  |||||||||
Sbjct: 149 attatatatgtattatatatatgatactgga 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 846
Length adjustment: 10
Effective length of query: 435
Effective length of database: 836
Effective search space:   363660
Effective search space used:   363660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)