BAC Information

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BAC

Clone NameMSMg01-106H22
Chromosome13 (Build37)
Map Location 64,790,608 - 64,790,877
singlet/doubletsinglet
Overlap genenone
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678
Downstream geneLOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106H22.T7 (MSMg01no106_h22.b1)MSMg01-106H22.TJ (MSMg01no106_h22.g1)
ACCAG320567AG320568
length1,5311,292
length of high quality
(start - end)
229 (136 - 364)270 (140 - 409)
definitionCHROMAT_FILE: MSMg01no106_h22.b1 PHD_FILE: MSMg01no106_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:01 2005CHROMAT_FILE: MSMg01no106_h22.g1 PHD_FILE: MSMg01no106_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTCTCNNTNTAACATTGCGCGCTAAGACTACTAAGGGAGAGGATCCGC
GGAATTCTCCAGACCGATTTCTCCCTTTAAGGTTCCTTTCCTGGTTAGAG
TAGTTTATTTTAAGCCCTTCCAAACTGTAAACAGNCCAAATTTCCATCAT
CAAATATATTTTTTACTTTTTTTTTTTTTTACAGTCCAGCCATTAACCCC
CTCGGGGTCCACGCTCCCACAGTTCCTCATCCCATTCCTCCCCTCCCCTC
TCTCCAAGAAATTGTCCCCACCCCTCTCCCCTATTCCCTGCCAGGCCTCT
CCACTCCCTTGGGACCTCAGGTAGTTCACTGCTTGCTTATATGTGTCTGG
GGGTTGGGGGTGGGGATGGAAGTGTCAACTCCTTCTCTTGTCTTCCTACC
CCTTTTTTTTTTTTTTCACATATCCTTTAATTTATTCTTTCTTTTTGAGC
AAACCCCCTCTTTTTTTTTCCCCCCCCCCCCTCTTTTTTACTTTTTTCTT
TTCTAAAAATAAATGGTCTTTTTTTATATCTCTTTTTTATCTTTTTTTCT
CAAATTTTTTCTTTACTACTCTTCTTACTTTCTTATCTCCCTCATTATTC
TTCTATACTACTTTCCTTCATCTTTTTATCCTTATATCCTCTCACCTTAT
ATTAACATTATATTTATCCTTTTCCATTTCTTTCATCACTACTTTAATCC
TATTCTACTCTTTATATCTATATACGTCTTTAATTCTTTAATATTCTCTC
TTTCTATTCTTTAATCTTTATTACTTATCCTTCCATCATTTTCTCTCTCA
CTCTTTTCTTCTATTATTTACTCTTTATACTTCTTACTCTTCTCATTCAT
TTCTACATCCTTTCTCCTTTTTCTCCTATCTACTTCATTTTTTTATTTCT
TTGTCTATTATCTTATCTTCTCTCATTCTCTTCTTTATCCTCTCCTCTCT
TCTTCCTACTTTTCTCTTCATCTATCTATTTCTTCTCTCTATTTCTCACT
ACTCTCTTCTTTACCCTTTCTTCATCTTAACTCTCTCTATATTNTTTTAC
ATCTAGTTTCTCTTTTGTCTATTCTCTCGTTATATTCTCTCTCTTACCTC
TCTTTTCTCACTCTTCATTATTTCTACTTCTACTCTCAATTAATCCATAC
ATTCATCTTATTTTTAATATATTCTCTTTAATCCTTCTTCATCTGTTCTC
ACTCTCTCTTATCTCTCTTCCTGCTTTCTCTTTCTGTCACCCTTGACTTA
CTCATTCTTTATATTATGTCTCTCTTTACAATCTACTTCACCATCTATCT
CTTCTGTTCTTTATTCTATATCTTAATCTTCCNCTATTCTCTTGTCTCCA
TCCCACTGCTTGACTTACACTATGTCTTGTATCTTTTTTCTATCTTTCGT
TATCACTTCATAATCTTCTCTCTTATGTCTACCCTCAATTCTTCGCTCAC
TATCCATATAATTACTTTATCTACTATTATTTATTCTTCTTGTATTATCT
CTCTTAACTTCTCCTACTCATTCTATTATTG
NCCAGATTATTTTCCAGTGATGTCAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCCTTATTAAAGCTCCCCTTA
NAAAANAGAAGAGAGCATTCNTCCCCCTTAAAAGCTCTTGTTTTGACTGA
GGTAACTAATTTCTGGTTATGTCCCTTTTACTGCATATGCAGATCCATGA
TCCCTGTTATAATCATATACATAAAAAGCAGCCCACATGCATTATTGCTG
AAGTGGTTTGTGATGTCTGTAATTTACCTAGGCCCAATATTTTTCCTTAG
CATTCATATGTGTCTCTAAAGAATCTCTTAATTTGTATCACTTTTCAACT
AGGATCAAGTTTTCCTATTTGTTAGAGGCAGTTTGTACAATTCAATGGAC
AGTCTGGGGAAATTTTTTTCTGTTGCAGATTATAGGGAAGTATGATAAGG
GCCTCTCTCTTCCCATATTTTATTGCTGCTTGTTGGTTCATTCTCAGGCT
TGCTCACTTATAGATTTAATGTTCACCTATTGTCTTATGTTTTTATTGCT
ATGAATAAACATCATGATCAGCTCAACACTTATTTTTTAAAGACCTCTAA
TTTGTCTTTGCTTATAGTTTCCACATTGCATCTATTATCATCCTGCTTTG
TTTCTCTGTTCTTCTCTTCATTGTTTGTTTGCCTTATCACTTGTTATTTC
TATATTGTTTTTTTTTTTTTCTTATATGTTTCTTTTTTTTTTCTTTTTGT
TTTTGTTATTTGATCTTTTTTTTCTCTCCTCTTATTTACTATTTTCTTTT
TAATTATCTCTACTTCTCCTTTATCTTGTCATCTTTTTATTTATCTCTAT
CTTTTTCTTACTTCTTTATATTTTTTTTTCTTTTTCACTCCCTTTTTTCA
ATTTCTATCTCTTTCATTATTTTCTTTATTTTCTTTTTTTCTGTTTATTA
TTTTCCTTTTTTTATTTTCTTTCCTTTCTCCTTTTCCTTTTTGTTATTTA
TTCCTTTCTTTCTCTTTTTCTTTCTCTTGTTTTATCTTCTCTCTCCATTT
CTACTTCCCTATTATTTATTTTCATCTTCTTTTTCTTCACCTTCTTTTCT
CTTTATCACATTTCTCTCTTTCCTCTTTACATTTTTCATTCTCTCTTCGT
ACTCATTTATCTATTCACCTCTTATTTACTTATTTTTCCTTTTATATTCT
TTTTTAACTCCTGTCTCGACATATTATTTTACATCCGATGCTCATTGTCT
CTTTCTATACATTCTTTTCCTCTCACTACTACCTTTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_h22.g1 MSMg01no106_h22.g1 CHROMAT_FILE:
MSMg01no106_h22.g1 PHD_FILE: MSMg01no106_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:01 2005
         (270 letters)



>mm_chr13_64790408_64791077
          Length = 670

 Score =  514 bits (266), Expect = e-150
 Identities = 269/270 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttttgactgaggtaactaatttctggttatgtcccttttactgcatatgcagatccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gttttgactgaggtaactaatttctggttatgtcccttttactgcatatgcagatccatg 411

                                                                       
Query: 61  atccctgttataatcatatacataaaaagcagcccacatgcattattgctgaagtggttt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 410 atccctgttataatcatatacataaaaagcagtccacatgcattattgctgaagtggttt 351

                                                                       
Query: 121 gtgatgtctgtaatttacctaggcccaatatttttccttagcattcatatgtgtctctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtgatgtctgtaatttacctaggcccaatatttttccttagcattcatatgtgtctctaa 291

                                                                       
Query: 181 agaatctcttaatttgtatcacttttcaactaggatcaagttttcctatttgttagaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agaatctcttaatttgtatcacttttcaactaggatcaagttttcctatttgttagaggc 231

                                         
Query: 241 agtttgtacaattcaatggacagtctgggg 270
           ||||||||||||||||||||||||||||||
Sbjct: 230 agtttgtacaattcaatggacagtctgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)