BAC Information

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BAC

Clone NameMSMg01-107C05
Chromosome13 (Build37)
Map Location 78,425,677 - 78,426,001
singlet/doubletsinglet
Overlap geneLOC100042683
Upstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676
Downstream geneLOC622365, LOC100043052, EG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107C05.T7 (MSMg01no107_c05.b1)MSMg01-107C05.TJ (MSMg01no107_c05.g1)
ACCAG321036AG321037
length1,3021,287
length of high quality
(start - end)
326 (132 - 457)328 (130 - 457)
definitionCHROMAT_FILE: MSMg01no107_c05.b1 PHD_FILE: MSMg01no107_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:35 2005CHROMAT_FILE: MSMg01no107_c05.g1 PHD_FILE: MSMg01no107_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNCCCGATTTTNNNNNNAGCACTGGGCGCTAAGACTCCTATGGGAGAGGA
TCCGCGGAATTCCTGATCTTTCCTAGACTCTTTTATTAAGGGGTGATGCA
TTTTGTCAAAGGCATTTTCCCTACTAAAGGAGATGATCATGTGATTTTTT
TCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTCCATTTATT
GAAACATCCCTACTTCTCTGGGATAAAGCCCACTTGGTGAATCCTACTTG
GTGAATGATAGTTTTAATGTGTCCTTGGATTTGGTTTTCAAGTTCTTTTT
TTTTTTTTAACTCAAAGTGACTTTATTACTTGTGTATACAACAGCATTAA
TGTCACTGGAGCAGAGGCTGTGGGTGACTCATATTTCCAATTGGGTGGGA
GCACCTGCTTTGTCTTATAGTATCAAACCAGCGGGTGAATTCTGCTCCCT
ATGAGAGTCAGTAGTAACTCCGCATACTTATCCTTTCTCTTCCTCTCAAG
GAGGTTTCAGACAGCAGCTGCTTTCTTAATCAAACGGAATAGATCCCCAG
GGAGATCAGGGGCAAGGCCTTTGGACTAAAGGATTCTCAAGATTTTAATT
CCAGTCACAAAATGGACCTGGGCCACTCCGCGTGAGTCCCTCAGGTTCAC
ACCTATCTGGGAGGGAGTCAGGCCTTTATTGGCAAACTTGTAAATTTGTT
TCTTCACCTCGTCAGATGTCCAATTCCACCATGTGGGTACACTACAGTAG
TAGCGCTGGCCTGACTGTGAACCTCTTTCTGGTATCTTGCTTTTCACCCC
TGATGTTGGTCCATCTGACCTTTTGTAAAACAGTTTTTTGAATATATTTA
TTAAATATCTTTTGGCTTCAATATTTCTAAGGTAACACTGCCCCCTATAG
TTCCTCTTTTTTTTTGTCGTGTATCTTTGTTTTGGTTTTAGGTTTTCACC
ATTTCTACTTTGGTTCTTCTTAATATCGTAATTGTATACACGTTACTACT
GTTTATCCTTCCTTCTCCATTTTTATCTATTATGGTTTTTAATAAATTTT
TTAGTTTTCAATATCTTTTCTTACTTATCGCTCTTTTATATATACTTTCT
CAAACTTATAACTCCCAATTTCTGTCTCTTGTGTCATTCCTTACTTCCTC
TCTTTTTCCTATCTTACTCACTATTTTTTAACGTACTGTCCCTCTTTTCT
TTCATTCTACGTGATATCTAACTCTTCTCTTATTCCTGTCCTGTGCACAA
CTTTATCTCTAGTCTCACTTTAGTGTAGGTCTCTCTCACCCGCATTTCTC
CC
NNCCGATTTTTTNNNGAGGATGGTAGCTTGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTTATCTCTCGAATAATTTT
AACATGAAGGGGTGTTGCCCTTTGACAAATACTTTTTCAGCATCTGAGGA
GACAATCATGTGATTTTTTTCCTTTGAGTTTGTTTATATAGCGGATTACA
TTAATGGGTTTTCATATATTAAACCAATCTTGCATTCCTGGAATGAAGCC
TACTTGGCCATGGTGAATGATGGTTTTGATGTGGTCTTGGATTTGGTTTG
CAAGACTTTTAGTGAGTATTTTTGCTTTGATATTCATAAGTGAGATTGAT
CTGAAGTTCTCTTTTTGGCTTGGTCCTTGTGTGATTTAGGTATCAAAGTA
ATTGTGACTTTTTAGAATGAGTTAGGTATTATTCTTTCTGTTTCTATTTT
ATGGAATATTTTTTTACCCCCCCCCCAACAGGTCTTCTTTGAAGGAAAGA
AAGAAGGGTGCTCTATATCCATCTGGCCCTTGGCTTTTTTGGTTGGTAGG
TTTTTTAATGACATTATCTATTTTCTTGTGTGATATGAGGTTGTTTATAT
AGTTTACCTGCTCTTGATTTATATTTTGATAACCGGCATCTGTCTAGAAT
ATCTTTCCACTCATCTAGATTTTCCAGTTTTTTTTCTATTTGTCTATCTA
AAATTTTTTTTATTTTATTTTTTCTTATCGATTAATGTCCTTTTCCTGTT
TCCCTTAATCCTGCTTCTTTATCTTTATGCCATGATACTCTTACCATCTT
CATTCTATCCTTTTCTTTGTAATATTTTTTTATTCAATTTTTTATTATCC
ATTACTCTTTCTCCTTAATATATTTGTCTTTTATACACTTATATTTAACT
TCTTACCTTTTTTATTACCAATTTTTATTTATCTCTCTCATTCTATCTTC
GCTTTCTTCCCTTAATTCTCTTTTCTTTTTTAATATATCTTTTTTCTATT
TTTTACTTCTTTTCTCTTGATAATTATATATTTCTATCACCGTTGTGTTT
TTTTTTTATCGCTTTCTTATCTTTACTATCTCTTAATGTCCTCTTATTTC
TTTCTACTTTCTCCTTTCGTATCTTTGTTTTTCCTACTCACTTAATCTTT
TTTCTCATCTCCTTCATCTCCCAACTTTATTTACTCCCTTGTCTACTCTT
CTTGCCATCTGATACAATTTTCTCCTATCGACTCATCTATACATATTTAC
TATCTATTCCTTCCTTCTAATTCTACCATACACTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_c05.b1 MSMg01no107_c05.b1 CHROMAT_FILE:
MSMg01no107_c05.b1 PHD_FILE: MSMg01no107_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:35 2005
         (326 letters)



>mm_chr13_78425476_78426201
          Length = 726

 Score =  576 bits (298), Expect = e-169
 Identities = 319/326 (97%), Gaps = 1/326 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgatcatgtgatttttttctttgagtttgtttatatagtggattacattgatggattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gatgatcatgtgatttttttctttgagtttgtttatatagtggattacattgatggattt 261

                                                                       
Query: 61  ccatttattgaaacatccctacttctctgggataaagcccacttggtgaatcctacttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccatttattgaaacatccctacttctctgggataaagcccacttggtgaatcctacttgg 321

                                                                       
Query: 121 tgaatgatagttttaatgtgtccttggatttggttttcaagttctttttttttttttaac 180
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 322 tgaatgatagttttaatgtgtccttggatttggttttcaaggt-tttttttttttttaac 380

                                                                       
Query: 181 tcaaagtgactttattacttgtgtatacaacagcattaatgtcactggagcagaggctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaagtgactttattacttgtgtatacaacagcattaatgtcactggagcagaggctgt 440

                                                                       
Query: 241 gggtgactcatatttccaattgggtgggagcacctgctttgtcttatagtatcaaaccag 300
           ||| ||||||||||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct: 441 gggcgactcatatttccaattgggtgggagcacctgcttagttttatagtatcaagccag 500

                                     
Query: 301 cgggtgaattctgctccctatgagag 326
           |||||||||||||||||||| |||||
Sbjct: 501 cgggtgaattctgctccctacgagag 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)