Query= MSMg01no107_f20.b1 MSMg01no107_f20.b1 CHROMAT_FILE:
MSMg01no107_f20.b1 PHD_FILE: MSMg01no107_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:09 2005
(283 letters)
>mm_chr13_116515823_116516505
Length = 683
Score = 538 bits (278), Expect = e-157
Identities = 281/282 (99%)
Strand = Plus / Minus
Query: 1 acctccctgaatcacagtgttactcccttgaggtacgctgggaagccaaagggagaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acctccctgaatcacagtgttactcccttgaggtacgctgggaagccaaagggagaaggc 423
Query: 61 taaggttgaggatccgaatgacctcatgtttagttttgtgttttgttttttatttctgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 taaggttgaggatccgaatgacctcatgtttagttttgtgttttgttttttatttctgat 363
Query: 121 tcattttgctcctcttactggttaggaggtaagtgataatatccaaaagaaaaggccatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcattttgctcctcttactggttaggaggtaagtgataatatccaaaagaaaaggccatt 303
Query: 181 taaaaaataattcaaactctcacttggcctacatctgtgaccttaccagaaatcttagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taaaaaataattcaaactctcacttggcctacatctgtgaccttaccagaaatcttagct 243
Query: 241 agaatattaccttttgaacagataactgagaccagatatata 282
||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 242 agaatattaccttttgaacagataactgagatcagatatata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no107_f20.g1 MSMg01no107_f20.g1 CHROMAT_FILE:
MSMg01no107_f20.g1 PHD_FILE: MSMg01no107_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:09 2005
(693 letters)
>mm_chr13_116440910_116442002
Length = 1093
Score = 1278 bits (661), Expect = 0.0
Identities = 686/701 (97%), Gaps = 13/701 (1%)
Strand = Plus / Plus
Query: 1 acagccagggctacacagaaaaactctgtcttg-----cctttaacaaaaaaaaagtgtg 55
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 198 acagccagggctacacagaaaaactctgtcttgaaaaa-----aacaaaaaaaaagtgtg 252
Query: 56 atttaaaatgaatataataataataat---taataataataataataatgaagaggaacg 112
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 253 atttaaaatgaatataataataataattaataataataataataataatgaagaggaacg 312
Query: 113 tagtttattcactatacttcttcatgttatttgtttttgttaaattcactgtatctatgg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tagtttattcactatacttcttcatgttatttgtttttgttaaattcactgtatctatgg 372
Query: 173 aaaaagataattttaaaaagaactactatttttgtaaataagaacatttgaatggtgtta 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaaaagataattttaaaaagaactactatttttgtaaataagaacatttgaatggtgtta 432
Query: 233 gcaatgtaagtcatttatttacctggagctgtgcttttatacaatagttatgaaagtgga 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gcaatgtaagtcatttatttacctggagctgtgcttttatacaatagttatgaaagtgga 492
Query: 293 ccaatcaattcacaatcatagcaccagtattactaatcaaactccaatacaacatccaac 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccaatcaattcacaatcatagcaccagtattactaatcaaactccaatacaacatccaac 552
Query: 353 aaaactcttttagcctattcagttatcatcattaaattttgaaccacttacaaggttgaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaaactcttttagcctattcagttatcatcattaaattttgaaccacttacaaggttgaa 612
Query: 413 attttagcttaatcatatctatacaataaccatatgatttaaagtaaggttttcattttt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 attttagcttaatcatatctatacaataaccatatgatttaaagtaaggttttcattttt 672
Query: 473 aaactgtgaaaactggcaatatgtcttagagaaggactggtctattgtaactggacagtc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aaactgtgaaaactggcaatatgtcttagagaaggactggtctattgtaactggacagtc 732
Query: 533 aaatattccttcactgtctctagttgaggtgtaatgttgaaaacagtcttacatatatac 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aaatattccttcactgtctctagttgaggtgtaatgttgaaaacagtcttacatatatac 792
Query: 593 tttacttactctcattttaaacaattttaatctatttaaagcaagcactagacatttctt 652
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 793 tttacttactctcattttaaacaattttaatctatgtaaagcaagcactagacatttctt 852
Query: 653 gtctcatcaattcaacattgtcccatagattcaataacctg 693
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 853 gtctcatcaattcaacattgtctcatagattcaataacctg 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
