Query= MSMg01no107_n04.b1 MSMg01no107_n04.b1 CHROMAT_FILE:
MSMg01no107_n04.b1 PHD_FILE: MSMg01no107_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:14 2005
(579 letters)
>mm_chr13_72866778_72867756
Length = 979
Score = 853 bits (441), Expect = 0.0
Identities = 486/501 (97%), Gaps = 2/501 (0%)
Strand = Plus / Plus
Query: 1 atttcagtctctgctggtagcttgtcaccatccttctaagggcagagctgtagagtggaa 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 180 atttcagtctctgctggtagcttgccaccatccttctaagggcagagctgtagagtggaa 239
Query: 61 gctctgtcctggtgaggcaggccccaactgtactacttttgggagactctctgtcatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gctctgtcctggtgaggcaggccccaactgtactacttttgggagactctctgtcatcaa 299
Query: 121 ggtgcagagattcttttgtgttctgcattagaaagtgacacccttggagtggattctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggtgcagagattcttttgtgttctgcattagaaagtgacacccttggagtggattctctg 359
Query: 181 aaattaccttattgcctccactcatgatctgttcagatccatacttacatattacaaatc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 360 aaattaccttattgcctccactcatgatctgttcagatccatacttacatattacagatc 419
Query: 241 ttgttaccaacctgaaaggatccctttgtgtcctaggtatcttgtctcagaaatcatgag 300
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 420 ttgttaccaacctgaaaggatccctttgtgtcctaggtatcttgtcacagagatcatgag 479
Query: 301 ctgtgggttgactgtaaagtgctgtgggctgactgtaaagtgctgcggcctgactgtaaa 360
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 480 ctgtgggttgactgtaaagtgctgtgggctgactgtaaagtgctgtgggctgactgtaaa 539
Query: 361 gtgctgtgggctcactgt-aaagtgctgtgggctcactgtaaagttctgtgggctcaatg 419
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtgctgtgggctgac-gttaaagtgctgtgggctcactgtaaagttctgtgggctcaatg 598
Query: 420 tgaagtcatgtggcctcattctaaagtgctgtgggcttactgtaaagtgctgtgggctca 479
|||||||||||||||||||||||||||||||||| || | | |||||||||||||||| |
Sbjct: 599 tgaagtcatgtggcctcattctaaagtgctgtggcctcattctaaagtgctgtgggctta 658
Query: 480 ctgtaaagttctgtgggctca 500
||||||||| |||||||||||
Sbjct: 659 ctgtaaagtgctgtgggctca 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_n04.g1 MSMg01no107_n04.g1 CHROMAT_FILE:
MSMg01no107_n04.g1 PHD_FILE: MSMg01no107_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:14 2005
(258 letters)
>mm_chr13_72911559_72912215
Length = 657
Score = 476 bits (246), Expect = e-139
Identities = 255/258 (98%), Gaps = 1/258 (0%)
Strand = Plus / Minus
Query: 1 gcattaaatttaccctcagaaacctccaggcaaggaagtaacaaattctaagtttttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gcattaaatttaccctcagaaacctccaggcaaggaagtaacaaattctaagtttttaaa 398
Query: 61 aaaataaatacctgacaacgaactaggtccaaaaaagtgattcctcagaaagaaagagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaaataaatacctgacaacgaactaggtccaaaaaagtgattcctcagaaagaaagagtg 338
Query: 121 aaaaaaaaatcttcaaaacaaataaaaatatgaaatctgctgaatcagagctgagacata 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 -aaaaaaaatcttcaaaacaaataaaaatatgaaatctgctgaatcagagctgagacata 279
Query: 181 tagataacaaagataaggtttattactctggccagccatccaaccacaaagttgattgtg 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tagataacaaagataaggcttattactctggccagccatccaaccacaaagttgattgtg 219
Query: 241 actggaaaaagacaatag 258
|||||||||||| |||||
Sbjct: 218 actggaaaaagaaaatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 657
Length adjustment: 9
Effective length of query: 249
Effective length of database: 648
Effective search space: 161352
Effective search space used: 161352
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
