Query= MSMg01no108_b17.b1 MSMg01no108_b17.b1 CHROMAT_FILE:
MSMg01no108_b17.b1 PHD_FILE: MSMg01no108_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:50 2005
(578 letters)
>mm_chr13_60675656_60676633
Length = 978
Score = 986 bits (510), Expect = 0.0
Identities = 554/578 (95%), Gaps = 19/578 (3%)
Strand = Plus / Minus
Query: 4 ggaattcaactctggcagtttagctgcttagggaactactgagctgtataaggcctggtg 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ggaattcaactctgggagtttagctgcttagggaactactgagctgtataaggcctggtg 574
Query: 64 gtcccactggtatctgtgatctaactctcagcccactactggctctctgtgacttcttta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gtcccactggtatctgtgatctaactctcagcccactactggctctctgtgacttcttta 514
Query: 124 gctttcagagtcatgttcatatgttctctcttatgtgtatgtgtgtgcgtgtgtgcatgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gctttcagagtcatgttcatatgttctctcttatgtgtatgtgtgtgcgtgtgtgcatgg 454
Query: 184 acatgtgcattgct-ggaaactagggattcacacacacaccatataagtactctaacacg 242
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 453 acatgtgcattgctagg-aagtagggattcacacacacaccatataagtactctaacacg 395
Query: 243 tgcctcctagaaacttgacctgaaatggtagaaccttctacagcaaaggtcagacgtctg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgcctcctagaaacttgacctgaaatggtagaaccttctacagcaaaggtcagacgtctg 335
Query: 303 ctagccctatgaactctgactttccacaaatctcggctttgttgttataagagatactgc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctagccctatgaactctgactttccacaaatctcggctttgttgttataagagatactgc 275
Query: 363 acgtagccacgatccttgcttaagcctttcccaagatgcaggcttgactaatcctgtctg 422
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 274 acgtagccacgatccttgcttaagcctttcccaagttgcaggcttgactaatcctgtctg 215
Query: 423 gtaggctggagacaggtctgtgagaggtgaatcacctgagatttccgtcaagcc--tttt 480
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 214 gtaggctggag--------gtgagaggtgaatcacctgagatttccatcaagcctttttt 163
Query: 481 tttgtggtagaaagagaggaagagatgttgggtctccattgcctggccttgatgctggca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tttgtggtagaaagagaggaagagatgttgggtctccattgcctggccttgatgctggca 103
Query: 541 caagctccaagtggctgaatgtgacccaatgagtgatg 578
|||||| ||||||||||||||||||||||||
Sbjct: 102 -------caagtgactgaatgtgacccaatgagtgatg 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_b17.g1 MSMg01no108_b17.g1 CHROMAT_FILE:
MSMg01no108_b17.g1 PHD_FILE: MSMg01no108_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:50 2005
(437 letters)
>mm_chr13_60571588_60572428
Length = 841
Score = 733 bits (379), Expect = 0.0
Identities = 422/439 (96%), Gaps = 6/439 (1%)
Strand = Plus / Plus
Query: 1 acttgtcattggtatataatagaaaggctagtggtttgtgttggttaattctgtacctgc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgtcattggtgtataatagaaaggctagtggtttgtgttggttaattctgtacctgc 260
Query: 61 cactttgttgagcaaatcgcttggggccttcccacactccttctgtccacatacttgtga 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 cactttgttgagcaaatcgcttggggtcttcccacactccttctgtccacatacttgtga 320
Query: 121 atcttcagggctgcttccctgcagcagcagggtgagccttgcagcctctgcgtatgaacc 180
|||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||
Sbjct: 321 atcttcagggctgcttccctgcagcagcggggtgag-cttgcagcctctgtgtatgaacc 379
Query: 181 agctaggcagcatgaggaacatccaacagggggagggctgtgcaagctgttgagatgcct 240
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 380 agctaggcagcatgaggaacatccaacagagggagggctgtgcaagctgttgggatgcct 439
Query: 241 agggaattagtggcccaaataaagcaggggcaggatgatgaaggagcatctatctacctg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agggaattcgtggcccaaataaagcaggggcaggatgatgaaggagcatctatctacctg 499
Query: 301 cagtggtgcagggcccagcgttttgcccagagaatgctcactcgttgaacatcacaaccg 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cagtggtgcagggcccagcattttgcccagagaatgctcactcgttgaacatcacaaccg 559
Query: 361 tgctcccctagactctgagtactgcctgctgtgcccccc-----ttctctccctggccaa 415
||||| |||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct: 560 tgctcacctagactctaagtactgcctgctgtgcccccccccccttctctccctggctaa 619
Query: 416 gttataagtttcacaaacc 434
|||||||||||||||||||
Sbjct: 620 gttataagtttcacaaacc 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 841
Length adjustment: 9
Effective length of query: 428
Effective length of database: 832
Effective search space: 356096
Effective search space used: 356096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
