BAC Information

Click to search

BAC

Clone NameMSMg01-108F03
Chromosome13 (Build37)
Map Location 64,423,795 - 64,424,232
singlet/doubletsinglet
Overlap genenone
Upstream geneFancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik
Downstream geneCtsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108F03.T7 (MSMg01no108_f03.b1)MSMg01-108F03.TJ (MSMg01no108_f03.g1)
ACCAG321797AG321798
length713712
length of high quality
(start - end)
442 (59 - 500)418 (85 - 502)
definitionCHROMAT_FILE: MSMg01no108_f03.b1 PHD_FILE: MSMg01no108_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:08 2005CHROMAT_FILE: MSMg01no108_f03.g1 PHD_FILE: MSMg01no108_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTCTTACTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTTGATGTTCAAGGAGATGATCCATTTGCCAG
AGGAATTTTTACGTTCTTTACATTGGTAAGTCCCCACCCCTCACCTTAAT
TTCTTCGATGTATTCTCCCGTTTGATTTCTGACCAGAAGGTTTTCCACAT
ACAGTACATTGAAAGGCTTTTGTTCCTGTGTGGATTCCCTGATGTCCTCT
GAAGGTTGACTTTTGGACAAATGGTTTCCCACATCCACTACATTCATGTG
GTTTCTCTCCGGTGTGCATCCTTTGATGTCCACTGAGAGCTGACTTCTGG
ACAAATGTTTTCTCACATCCATTACATTTACATGGTTTCCCTGCTGTGTA
CTGACTTCTGGGAGAAAGCCTTTCCACAGTCATTACATGCAGATGGTTTC
TCGTCTGTGTGAGTTCTGTGATGTTGGGATGTCCCCTTTTTTTTTTTTTT
TGAGGCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGT
ATACCATGCTGGCCTTGAACTCCTAAATCTGCCTGCCTCTGCCTCCCGAG
TGCTGGTATTAAAGGTGTGTGCCACCACTCCCAGTGTTGGGATGTCCTTT
TCCACTAATTCATTACAGCTAGTGCTTTATTTTCCCGTGAGTTTTTTTGT
CGTTTTTTTTGTT
ATCACCTNCCTCGATGAAGNTGAGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCAAAGCT
ATAACCGGGAGACTCTGTCTAAAAAAGAAAGCCTCCTGGTTTTGGCACTT
GCGCAGGAAGTGAAGGGGATCTCTGAGGAGGCCAGCTTGGCCTACTGAGC
AGGTTTCAGGACAACTGAGGCTACACAAAGAAGTAAAAAGGAAAAAAAAA
CCAAACAAACCTAAAAAGTGGAGAGAAGTACCCAAATTACATCTCTTAGT
AACCAACCCCAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAACAAAGTCTGAG
AACCCAAGTTCAGTCCCTGGGACCCACATGGTAGATGGAGAGAACCAACT
CTCACAAATTGTCCCCTGACTTCTACATGTGTATGATGGCCCATGCATGT
GCAACTCATAGAAATACAAAATAAATGAAGTTATTGATAAACAAATAAAT
AAATGGCACCCAGAACCTGGAGACACCTGGCCTAGACCCCGACCACTAGT
TACGCTTGCTTGGGTCAGACTATGCATCTTATACTGAACTCTTACTTTGC
CTTTCAGTTAGCATCCTTTTAGTGACCCTCCCCGAAACACACCTTCCTTA
TTCATAAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_f03.b1 MSMg01no108_f03.b1 CHROMAT_FILE:
MSMg01no108_f03.b1 PHD_FILE: MSMg01no108_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:08 2005
         (442 letters)



>mm_chr13_64423591_64424432
          Length = 842

 Score =  839 bits (434), Expect = 0.0
 Identities = 437/438 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgatgttcaaggagatgatccatttgccagaggaatttttacgttctttaca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgatgttgaaggagatgatccatttgccagaggaatttttacgttctttaca 264

                                                                       
Query: 65  ttggtaagtccccacccctcaccttaatttcttcgatgtattctcccgtttgatttctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggtaagtccccacccctcaccttaatttcttcgatgtattctcccgtttgatttctga 324

                                                                       
Query: 125 ccagaaggttttccacatacagtacattgaaaggcttttgttcctgtgtggattccctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagaaggttttccacatacagtacattgaaaggcttttgttcctgtgtggattccctga 384

                                                                       
Query: 185 tgtcctctgaaggttgacttttggacaaatggtttcccacatccactacattcatgtggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtcctctgaaggttgacttttggacaaatggtttcccacatccactacattcatgtggt 444

                                                                       
Query: 245 ttctctccggtgtgcatcctttgatgtccactgagagctgacttctggacaaatgttttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctctccggtgtgcatcctttgatgtccactgagagctgacttctggacaaatgttttc 504

                                                                       
Query: 305 tcacatccattacatttacatggtttccctgctgtgtactgacttctgggagaaagcctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcacatccattacatttacatggtttccctgctgtgtactgacttctgggagaaagcctt 564

                                                                       
Query: 365 tccacagtcattacatgcagatggtttctcgtctgtgtgagttctgtgatgttgggatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccacagtcattacatgcagatggtttctcgtctgtgtgagttctgtgatgttgggatgt 624

                             
Query: 425 cccctttttttttttttt 442
           ||||||||||||||||||
Sbjct: 625 cccctttttttttttttt 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)