Query= MSMg01no108_g14.b1 MSMg01no108_g14.b1 CHROMAT_FILE:
MSMg01no108_g14.b1 PHD_FILE: MSMg01no108_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:16 2005
(562 letters)
>mm_chr13_42992767_42993726
Length = 960
Score = 915 bits (473), Expect = 0.0
Identities = 540/569 (94%), Gaps = 17/569 (2%)
Strand = Plus / Plus
Query: 5 gaattctcagagattccc-gagggaaccctcagggatctacccatcgataaacgagtaaa 63
|||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaggga-tccctgagggaaccctcagggatctacccatcgataaacgagtaaa 263
Query: 64 tgagaaaaggtcctgctgtaaggtctgggtagtagcaagggggtttcggtactagggatc 123
|||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 264 tgag-aaaggtcctgctgtaaggtctgggtagtagcaaggggggttaggtactagggatc 322
Query: 124 tgggtagagagatatagagccttggaggagtggaagctggaagcctaggagattcgggtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgggtagagagatatagagccttggaggagtggaagctggaagcctaggagattcgggtg 382
Query: 184 gtccccacaggtcttacaaatctcaggaatattgctccaacctcttactccattgaaacc 243
|||||| | || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 gtcccc-ctggacttacaaatctcaggaatattgctccaacctcttactccattgagacc 441
Query: 244 actgagatggtgaccactgagatggagatggaaaccaatggaaacctagtgtggactggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actgagatggtgaccactgagatggagatggaaaccaatggaaacctagtgtggactggg 501
Query: 304 ctggagaagctgctcagtggctaagagcaggtgatgctcttagagaggacccaagctcag 363
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctggagaagcagctcagtggttaagagcaggtgatgctcttagagaggacccaagctcag 561
Query: 364 ttcccagcacctacctggtggttcacaatcatctgcaactcaagttccagaggatccatc 423
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 562 ttcccagcacctacctggtgactcacaatcatctgcaattcaagttccagaggatccatc 621
Query: 424 tctctct--g-----cac------caggaacacatgcacatacatacacagtgcccatac 470
||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctctctctgtcctccacaagcgccaggaacacatgcacatacatacacagtgcccatac 681
Query: 471 atgcatgcacgcatgcaaaatgctcagacatataataaaaaataaaagttaaaaattaaa 530
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atgcatgcacacatgcaaaatgctcagacatataataaaaaataaaagttaaaaattaaa 741
Query: 531 ttaaatatgctatgtagggactgaacagc 559
|||||||||||||||||||||||||||||
Sbjct: 742 ttaaatatgctatgtagggactgaacagc 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 960
Length adjustment: 10
Effective length of query: 552
Effective length of database: 950
Effective search space: 524400
Effective search space used: 524400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_g14.g1 MSMg01no108_g14.g1 CHROMAT_FILE:
MSMg01no108_g14.g1 PHD_FILE: MSMg01no108_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:16 2005
(505 letters)
>mm_chr13_43143908_43144811
Length = 904
Score = 899 bits (465), Expect = 0.0
Identities = 489/497 (98%), Gaps = 3/497 (0%)
Strand = Plus / Minus
Query: 5 gaagtgttcctacttctcacacagttcctgactctccacagagctagtccatcactaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaagtgttcctacttctcacacagttcctgactctccacagagctagtccatcactaaga 640
Query: 65 tgcaaccccacgtccccatgacggtccttcaagctatgctttccttccttctctagactg 124
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 639 tgcagccccacgtccccatgacggtccttcaagctatgctttctttccttctctagactg 580
Query: 125 gtgttaattcaaggtacactttgtcacttgctgggtggtttgaggtgttttagcctggga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gtgttaattcaaggtacactttgtcacttgctgggtggtttgaggtgttttagcctggga 520
Query: 185 gcaggagagcgtcagattccattagcgactgcctcaagaccagctagctgc-agtcatca 243
||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct: 519 gcaggagagtgtcagatt-cattagcgactgcctcaagaccagctagct-ctagtcatca 462
Query: 244 ccacaagaccttacctggacttcctattcatatcatctctcaaatggttcacaggtacag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ccacaagaccttacctggacttcctattcatatcatctctcaaatggttcacaggtacag 402
Query: 304 agatgcagaagggtgacctcggtcacctcagtggagcccacaccctgagcaatctgaaga 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agatgcagaagggtgaccttggtcacctcagtggagcccacaccctgagcaatctgaaga 342
Query: 364 agaatgtttctcccatcttaggtagaagaaagtggaaggagccacagagaggcaacagaa 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 341 agaatgtttctcccatcttaggtagaagaaagtggaaggagccacagagaggcagcagaa 282
Query: 424 ggaattgtgtcctgaaccacaagttctttggatgtttgtgtgctggtgagaaccccagct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggaattgtgtcctgaaccacaagttctttggatgtttgtgtgctggtgagaaccccagct 222
Query: 484 catttttggaagacaaa 500
|||||||||||||||||
Sbjct: 221 catttttggaagacaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 904
Length adjustment: 10
Effective length of query: 495
Effective length of database: 894
Effective search space: 442530
Effective search space used: 442530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
