Query= MSMg01no111_b24.b1 MSMg01no111_b24.b1 CHROMAT_FILE:
MSMg01no111_b24.b1 PHD_FILE: MSMg01no111_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:02 2005
(695 letters)
>mm_chr13_6057522_6058622
Length = 1101
Score = 1280 bits (662), Expect = 0.0
Identities = 689/702 (98%), Gaps = 8/702 (1%)
Strand = Plus / Minus
Query: 1 attgttttctttgttataattcactcaaaatgtgattaaaaaatgagtaggcggtagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 attgttttctttgttataattcactcaaaatgtgattaaaaaatgagtaggcggtagcta 842
Query: 61 tt-------acaatataacctggcatcggatttgataagagagagaaagagagatgggac 113
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttacaactaacaatataacctggcatcggatttgataagagagagaaagagagatgggac 782
Query: 114 ctactatgtaatttcatttacagtaagtggtccaaaacatcctcactcacaaaaacacat 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ctactatgtaatttcatttacagtaagtggtccaaaacatcctcactcacaaaaacacat 722
Query: 174 agagcataaaatggttaagtaccagaaacccaggaggctacagccccctccccacagggg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agagcataaaatggttaagtaccagaaacccaggaggctacagccccctccccacagggg 662
Query: 234 acacataataatgtaacatacaaataactcttgtccagcagggaaacatttcccagcaac 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acacataataatgtaacatacaaataactcttgtccagcagggaaacatttcccagcaac 602
Query: 294 actccacctggaaagatgttctcttccctcccaaaggctacattaaaaatcctttccttg 353
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 actccacctggaaagatgtcctcttccctcccaaaggctacattaaaaatcctttccttg 542
Query: 354 aaattctcaactaactacagtgagaatagaaggcattttgagactcacataccttttcta 413
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 541 aaattctcaactaactacagtgagaatagaaggcattttgaggctcacataccttttcta 482
Query: 414 cactcaaacattttattggataattgggggaagaagtttaacatactggaagaacattca 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 481 cactcaaacattttattggataattgggggaagaagtttaacatactggaagaacactca 422
Query: 474 tgcatttatttgtaggttaattgtccacaagatcctaggcagaaaggtgggtcaatagag 533
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 421 tgtatttatttgtaggttaattgtccacaagatcctaggcagaaagatgggtcaatagag 362
Query: 534 cctacaaggccaggaaataaaagaacagtatgatggcaaagtctcagtaaaactttcaac 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctacaaggccaggaaataaaagaacagtatgatggcaaagtctcagtaaaactttcaac 302
Query: 594 atggtcatgactccatacttctatgacaactggagctttgaggattgcctggtcaatctt 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 atggtcatgactccatacttctatgacaactggagctttgaggattgcctggtcaatc-t 243
Query: 654 ttataaaaactagctacacactatggaggaaaaggtgttttc 695
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttataaaaactagctacacactatggaggaaaaggtgttttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1101
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1091
Effective search space: 747335
Effective search space used: 747335
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_b24.g1 MSMg01no111_b24.g1 CHROMAT_FILE:
MSMg01no111_b24.g1 PHD_FILE: MSMg01no111_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:02 2005
(463 letters)
>mm_chr13_5893940_5894802
Length = 863
Score = 843 bits (436), Expect = 0.0
Identities = 454/460 (98%)
Strand = Plus / Plus
Query: 1 ccttcaatagagtatgattttctctagttctcaaaatggctttattaaaggaaccatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttcaatagagtatgattttctctagttctcaaaatggctttattaaaggaaccatatg 260
Query: 61 gtgatgagatctattgatttcaggataatatataaagcacatgttggaacatttaatcat 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgatgagatctattgatttcagtataatatataaagcacatgttggaacatttaatcat 320
Query: 121 gggtcttgtgattcattgcaaagggccttgagagtggtgactgacgtgacaaggtgggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtcttgtgattcattgcaaagggccttgagagtggtgactgacgtgacaaggtgggca 380
Query: 181 tagtgtgactcagacctactcccatcgttcaaaggtcatggaggttgggcaggagcgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtgtgactcagacctactcccatcgttcaaaggtcatggaggttgggcaggagcgcct 440
Query: 241 ccaagcacctgtttcccccaaccacagtatctctttcacctcctgctgtcatctccatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagcacctgtttcccccaaccacagtatctctttcacctcctgctgtcatctccatac 500
Query: 301 aatgtagatccatcatgcagggatttctccatgccgttctgtcttttagtgcatgatctt 360
|||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 501 aatgtagatccatcattcagggatttctccatggggttctgtcttttagtggatgatctt 560
Query: 361 ctgggatgacttgttactccttccagttgaaaggtcatctgctccatggggatcaacctt 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggaatgacttgttactccttccagttgaaaggtcatctgctccatggggatcaacctt 620
Query: 421 tgagacaggtgccccaagtggaaaactcatgtgtttaata 460
||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagacaggtgccccaagtggaaaactcatgtgtttaata 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
