Query= MSMg01no111_e08.b1 MSMg01no111_e08.b1 CHROMAT_FILE:
MSMg01no111_e08.b1 PHD_FILE: MSMg01no111_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:22 2005
(786 letters)
>mm_chr13_89996298_89997484
Length = 1187
Score = 1452 bits (751), Expect = 0.0
Identities = 778/787 (98%), Gaps = 1/787 (0%)
Strand = Plus / Minus
Query: 1 tttgaccacatagaagcaaaaattaagtttacccgtaaactgaggtaagtaagctggctt 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 987 tttgaccacatagaagcaaaaattaagtttacaggtaaactgaggtaagtaagctggctt 928
Query: 61 tgtaatagcacaaaagtaacactagattacccaagtggacccagtataatcaccaagtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 tgtaatagcacaaaagtaacactagattacccaagtggacccagtataatcaccaagtgg 868
Query: 121 tagactcagggg-aaaaaatgagagcagatgaacaactgtcagcaccattatagtggtgt 179
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tagaatcaggggaaaaaaatgagagcagatgaacaactgtcagcaccattatagtggtgt 808
Query: 180 tgatgtgatgatgtatattgtcgccctccttgaaagtgggagagatttcaagaagctgag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tgatgtgatgatgtatattgtcgccctccttgaaagtgggagagatttcaagaagctgag 748
Query: 240 gaatatagaaaagtttcttctcctcctaaacctccaaaggagaaccaatccagccaacac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaatatagaaaagtttcttctcctcctaaacctccaaaggagaaccaatccagccaacac 688
Query: 300 tgatttttacccaagctcctaactgtaatatggtagagttggttctaagatgctacattg 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgatttttacccaggctcctaactgtaatatggtagagttggttctaagatgctacattg 628
Query: 360 tgtgaatcatagcatcagccataggaactaaagcaactccttctttgctgtggggaagcc 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgtgaatgatagcatcagccataggaactaaagcaactccttctttgctgtggggaagcc 568
Query: 420 atccttggccctaggttcatgagaaagcgctatcctctacatctcataagaacatctgac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atccttggccctaggttcatgagaaagcgctatcctctacatctcataagaacatctgac 508
Query: 480 catgcagtttccactgctctggcactagacttggctgaacatggagttcatttactgtat 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 catgcagtttccactgctctggcactagacttggctgaacatggagttcatttactgtag 448
Query: 540 ttaaatggaactactaaattctgaacttcaagtcatacattgtatcctcagggaaacaag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttaaatggaactactaaattctgaacttcaagtcatacattgtatcctcagggaaacaag 388
Query: 600 tcactgttgactgttcagagaacactggtttcttggaatgttgatggttgagagattgta 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcactgttgactgttcagagaacactggtttcttggaatgttgatggttgagagattgta 328
Query: 660 agataagaccacccaatgccaggctcatatgggaaccctggtaaacaagcttccttattt 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agaaaagaccacccaatgccaggctcatatgggaaccctggtaaacaagcttccttattt 268
Query: 720 tttttcttaaaacctttagaaatacaatctttgtgtacattttgggggggttatttggtt 779
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 267 tttttcttaaaacctttagaaatacaatctttgtgtacattttgggggggttgtttggtt 208
Query: 780 gtttagt 786
|||||||
Sbjct: 207 gtttagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 786
Length of database: 1187
Length adjustment: 10
Effective length of query: 776
Effective length of database: 1177
Effective search space: 913352
Effective search space used: 913352
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_e08.g1 MSMg01no111_e08.g1 CHROMAT_FILE:
MSMg01no111_e08.g1 PHD_FILE: MSMg01no111_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:22 2005
(657 letters)
>mm_chr13_89851368_89852422
Length = 1055
Score = 1220 bits (631), Expect = 0.0
Identities = 650/657 (98%), Gaps = 2/657 (0%)
Strand = Plus / Plus
Query: 1 agttaagaccccactctgacgttgttatccccccacctcccaaaaaaaaaatcccacttg 60
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 201 agttaagaccccactctgacgttgttatctccccacctcccaaaaaaaa--tcccacttg 258
Query: 61 ccaaactccctactgtgttaaccataatggtggtattaagtctgtttgtgtcactgcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ccaaactccctactgtgttaaccataatggtggtattaagtctgtttgtgtcactgcact 318
Query: 121 gtaggtcctccatgcacttagtacagaatacagaatccatcccgacatccactggaacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtaggtcctccatgcacttagtacagaatacagaatccatcccgacatccactggaacct 378
Query: 181 cagtgggtatatatttgctgcagctttttaatctgtatttttaaaagagatatcaaacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagtgggtatatatttgctgcagctttttaatctgtatttttaaaagagatatcaaacac 438
Query: 241 ttacgtttaaagcagtaggcatcaaatctgctatcaaggagagggaagcatgtctggttc 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 439 ttacgtttaaagcagtaggcatcaaatctgctatcagggagagggaagcatgtctggttc 498
Query: 301 tcaaaacgatacagggttctcaccccaagtagacctcctccacactgggccctggccaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcaaaacgatacagggttctcaccccaagtagacctcctccacactgggccctggccaca 558
Query: 361 gtcacagggtgccgcacgctggcatccgacagccagccgtaatcgcattggtcaaagcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtcacagggtgccgcacgctggcatccgacagccagccgtaatcgcattggtcaaagcca 618
Query: 421 tttctccaagctgcctgaagttctccaacagtcgccagcctcgcatccctgcttgtacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttctccaagctgcctgaagttctccaacagtcgccagcctcgcatccctgcttgtacac 678
Query: 481 tctgcttcggcctcctcgaaggtgaacttactgggagcagtgatgtggaacacatcgcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tctgcttcggcctcctcgaaggtgaacttactgggagcagtgatgtggaacacatcgcct 738
Query: 541 gcaagaagaggaggaaaagggcttaggtcgacatctcattctctcccagatttgataaat 600
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 739 gcaagaggaggaggaaaagggcttaggtcgacacctcattctctcccagatttgataaat 798
Query: 601 gctgagggaagacgtgatacttcttacagtaaggaggcagctgcttatgcggtagag 657
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 799 gctgagggaagacgtgatacttcttacagtgaggaggcagctgcttatgcggtagag 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1055
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1045
Effective search space: 676115
Effective search space used: 676115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
