Query= MSMg01no111_k06.b1 MSMg01no111_k06.b1 CHROMAT_FILE:
MSMg01no111_k06.b1 PHD_FILE: MSMg01no111_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:13 2005
(821 letters)
>mm_chr13_8818186_8819400
Length = 1215
Score = 1454 bits (752), Expect = 0.0
Identities = 791/806 (98%), Gaps = 7/806 (0%)
Strand = Plus / Plus
Query: 17 gaattcctgtcctgacttgctcccttgatgaacagtgatatggaatacaagccaaataaa 76
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcctgtcctgacttgcttccatgatgaacagtgatatggaatacaagccaaataaa 275
Query: 77 acctttcctccccaagttggtttggtcttagtgtttcatcacaacaatggtaa-ccccaa 135
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 276 acctttcctccccaagttggtttggtcttagtgtttcatcacaacaatggtaacccccaa 335
Query: 136 ctaagatactgtgctttgggatctcagttaaacacgcagccaaaagaactctgcctccac 195
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 336 ctaagatactgtgctttgggatctcagttaaacacacagccaaaagaactctgcctccac 395
Query: 196 tacttatcaactcacatactacaaggtgaggtcccagcccgtagcccacatagtataagc 255
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct: 396 tacttatcaactcacatactacaaggtgaggccccagcccctaacccacatagtataagc 455
Query: 256 tgaggccccagcccccacttcacagagcatcaagaagtcatccaagggcctgctttaagg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgaggccccagcccccacttcacagagcatcaagaagtcatccaagggcctgctttaagg 515
Query: 316 caccaggactaggtgttccttggatacattctgatcctgctgggctaaactggagccgtg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 caccaggactaggtgttccttggatacattctgatcctgctgggctaaactggagccgtg 575
Query: 376 aatgcaggcacgaatgcaggggatgagatgaacagaacaggcaaaagcatccaccaaact 435
||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 576 aatgcaggcac---t--aggggatgagatgaacacaacaggcaaaagcatccaccaaact 630
Query: 436 cctgtatctcacgtctgatggtagcaaggaataattccctaacttatacggaaaacagtt 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cctgtatctcacgtctgatggtagcaaggaataattccctaacttatacggaaaacagtt 690
Query: 496 tctatttctggtgataccccaccataggaagatgtttctctggtcggaggtagaggtagg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tctatttctggtgataccccaccataggaagatgtttctctggtcggaggtagaggtagg 750
Query: 556 tatcccatctccaggacttcccaccaatctaagactagctcatcatctcatgaaacactt 615
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 751 tatcccatctccaggacttcccaccaatctatgactagctcatcatctcatgaaacactt 810
Query: 616 gctaaagttaaatttttatgtcttctaaatagtttaatgtggtctgtttgtatttcttct 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 811 gctaaagttaaatttttatgtcttctaaatagtttaatgtggtctgtttgtatttct-ct 869
Query: 676 gaggcactactgatactacaaattctcctttgctgttcataacgaacacaatacctgtcg 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gaggcactactgatactacaaattctcctttgctgttcataacgaacacaatacctgtcg 929
Query: 736 gctgctccggggaagccgtgctagcctcactcccgacatatcaaacaatcgcacttgccg 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 gctgctccggggaagccgtgctagcctcactcccgacatatcaaacaatcgcacttgccg 989
Query: 796 gttgtcatgggggagggctatgattt 821
||||||||||||||||||||||||||
Sbjct: 990 gttgtcatgggggagggctatgattt 1015
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 821
Length of database: 1215
Length adjustment: 10
Effective length of query: 811
Effective length of database: 1205
Effective search space: 977255
Effective search space used: 977255
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_k06.g1 MSMg01no111_k06.g1 CHROMAT_FILE:
MSMg01no111_k06.g1 PHD_FILE: MSMg01no111_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:13 2005
(725 letters)
>mm_chr13_8928935_8930054
Length = 1120
Score = 1309 bits (677), Expect = 0.0
Identities = 708/721 (98%), Gaps = 5/721 (0%)
Strand = Plus / Minus
Query: 5 tgcctaaaagtactaggctgtggagtcctataacagccacaaaaattctgaggagataga 64
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 920 tgcctcaaagtactaggctgtggagtcctataacagcaacaaaaattctgaggagatgga 861
Query: 65 gagtactgtttcattcagcgactcaactgaggatgacctgtcagacctagaagacagcat 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gagtactgtctcattcagcgactcaactgaggatgacctgtcagacctagaagacagcat 801
Query: 125 ttcccattttaactcaacctcacaggatgctactgtggaggcagagactgagaagactga 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttcccattttaactcaacttcacaggatgctactgtggaggcagagactgagaagactga 741
Query: 185 cagtgccatcagggtcagccacacatctctcagtgttgtattgttgcctgaagacaccat 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cagtgccatcagggtcagtcacacatctctcagtgttgtattgttgcctgaagacaccat 681
Query: 245 ctgcaaacagttcccagaacctcaagatgatgccaaggttaccaagagcatcagtccatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctgcaaacagttcccagaacctcaagatgatgccaaggttaccaagagcatcagtccatc 621
Query: 305 cagtgacatgagtgaaattgacctacagttcagtgagagaatacatgatactaaatactc 364
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagtgacatgaatgaaattgacctacagttcagtgagagaatacatgatactaaatac-- 563
Query: 365 tagtctctgcccagaataggaacactgaatatgaaggtgacagtgacataatccaagagg 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ---tctctgcccagaataggaacactgaatatgaaggtgacagtgacataatccaagagg 506
Query: 425 agtcaccacctccatctagcaaagaccagcctatgaaggtacccatagcctccaaaacga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 agtcaccacctccatctagcaaagaccagcctatgaaggtacccatagcctccaaaaaga 446
Query: 485 agaaaagaaggcagattagtcacctgttttacaggctgttgcatctgtaccccaaagaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaaagaaggcagattagtcacctgttttacaggctgttgcatctgtaccccaaagaaa 386
Query: 545 ggagacacaacagccaggtaaggcacaacaaggcagggaaaagaaagtcgcaaggaaccc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggagacacaacagccaggtaaggcacaacaaggcagggaaaagaaagtcgcaaggaaccc 326
Query: 605 tagtaggcaaggccaccaattttccttgtgtatttgatctttgctttctcgatgcccttt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagtaggcaaggccaccaattttccttgtgtatttgatctttgctttctcgatgcccttt 266
Query: 665 gatacagatatgatggctgcacccatttataggatgggaaccctaagattgttgtcatcc 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatacagatatgatggctgcacccatttataggatgggaaccctaagattgttgtcatcc 206
Query: 725 t 725
|
Sbjct: 205 t 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1120
Length adjustment: 10
Effective length of query: 715
Effective length of database: 1110
Effective search space: 793650
Effective search space used: 793650
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
