BAC Information

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BAC

Clone NameMSMg01-111N17
Chromosome13 (Build37)
Map Location 17,813,596 - 17,814,061
singlet/doubletsinglet
Overlap geneCdc2l5
Upstream gene5033411D12Rik, 2810021B07Rik
Downstream geneRala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2, Vps41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111N17.T7 (MSMg01no111_n17.b1)MSMg01-111N17.TJ (MSMg01no111_n17.g1)
ACCAG324420AG324421
length1,1451,157
length of high quality
(start - end)
638 (75 - 712)647 (80 - 726)
definitionCHROMAT_FILE: MSMg01no111_n17.b1 PHD_FILE: MSMg01no111_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:42 2005CHROMAT_FILE: MSMg01no111_n17.g1 PHD_FILE: MSMg01no111_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTACATTGCGCGCTATXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTTGATGAGTATGACCTATTAACTCTGTGCCTGGATTACCTATTCTTGA
GACTCCCCTATAGAATCAGTTTATTTCCAAAACAATTGGTAATAGTAGCA
AATATGTGACTAAAAATTTAAAAGATTTTACTAAAAAGTTCTGTACGAAT
CCTGTGTTGTAGCCTATTCTGTTACTCTCCTTTTTGTTTATGTCTGGCTT
CTACAAATAGCATGTTTCTGCATCCTTTTTCAAAATTCCTGTTTAGTGTA
CAGTGTGCTATAGTTGGTTTAAAAAAGTTATTCTAATAGCTTTTATTAAT
ATATATTCATAATTTTATTTATTGATTATTCAGAAGACAAAAATATTTCA
TCTGTAGGGTACAGCAGTTCATATGCGGGCACAGCAGCTATGACAATATG
CACAAGGCCCACTTCAGATCAAGCCAGACAAAATCCCAGCTTGGAGGGAA
GGAGTTAGTCATGAAAGCTCACTCCCAGCTGAGGAGATATTTGCAGTTAT
GGCTGCTGGGAAAGGGAGAGTCACCTTTTTTCTTCAGAGATGTGGCCCCT
TTAGAGTATATTTATATTCCAGCAGGTAGCCCCTTACCCATACACATACT
GGTAGCACTAAGTTGACTTAGTGAGTTTTGAGAGAGAAAGAAAACACATG
AAATTGGGAGGGCATAGAGATTTAGGGGAGATAGGAAAGGCATTTTAGTG
GGGAGATTCGGGATGTACTTGTTCAAACACATTAATGCATGAATACCATT
TTAAACAATAAAAATTTAGGACAAATAAAAAGAAAAATAATTAGTCCACC
ACTAAAGTTAAAACCCTGAAGTATGGATGAATTTTATTGAATGTTTGTAT
GAAGCTTTCCAGAATGTCTTGTGGGAAGGGAATGCCTTTCGGGGTACATT
GTAACATTAGTATTTGTGGCTTTGGACTTTGTGAATTTAGCATTGGGTAG
GTTTTTTTCAACCCTTCCCTTTGGGGCAAGATTGTCTCTGAATTTTGGGG
GTTTTAAGGGTGTAGAAAAACCGAAATCCTTTTGGGGCTTGAACTTGAAG
ATTCTTTTTCCAAATCAAAAACCCCCCTAAGAAATAGGACCTTGA
NNTTTGATTGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTTTTAAGACTCCCTTGGACTTGAGCCTTATACAA
GGAGATATTACTGGATCCATTTGTATTCTTCTACATGATAACCTCCAGTT
GAGACAGCACCATGTGTTGAAAATGCTATCTTTTTTCCACTGGATGGTTT
TAGCTCCTTTGTCAAAGGTTAAGTGACCATAGGTGTGTGGGTTCATTTCT
GGGTCTTCAATTCTATTCCATTGATCTACCTGCATGTCACTGTACCAATA
CCATGCAGTTTCTAACACAATTGCTGTGTATTACAGCTTGAGGTCAGGGA
TGCTGATTCCCCCAGAAGTTCTTTTATTGTTGAGAATAGTTTTCACTCTT
CCTGGGTTTTTTGTTATTCCAAATGAATTTGCCAATTGCTCTTTCTAACT
CTATGAAGAATTGAGTTGGAAATTTTATGGGGATTGCATTGAATCTGTAG
ACTGCTTTAGGCAAGATGGCCATTTTTACTATATTAATCCTGCCAATCCA
TGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTATTTCTTTCTTCG
AAGACTTGAAGTTCTTCTCACACAGATCTTTCACTTTCTTAGTTAGAATC
ACACCAGAGTATTTTATATTATTTGTGACCCACAATTTTGAATCCTTCTG
CTACCTTTTGTGAAAGTATTTATTAGGCAAAGAGGATCCCTGGTAATATC
TTTAGGTAGACCCAAGAATACTTTGAATTCTTCCTTTCCTATTTGTATCC
CCTTAATCACCTCCTGATGTTTTACAGCTCTAGGTAAGACTTTGAAATCT
GTATTTGAGTAGTATGGAGAAATGAACATTCCTTGTCTTTTTCCATGATA
TAGTAAAAAATGCTTTGAATTTTCTCCCACATTTAAAATGATTGATGTTT
GCTAAAACTTTGCTGCAAAATTGCCCTTTTTTTATTTGAAAAAATTTTTT
TAATAATTTCCTTTTGATATTATTTATAACCCCTTTACGCCTTCTTGTTT
GTGTTTATTTTGCTTTTTTTACCAAATTTGATATTTACCCTTGTGGCTAA
ATTTCTTCTTTTTACCCAAAACAAACCCCACTTCCTCTTTTTTTAGAGCT
CTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_n17.b1 MSMg01no111_n17.b1 CHROMAT_FILE:
MSMg01no111_n17.b1 PHD_FILE: MSMg01no111_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:42 2005
         (638 letters)



>mm_chr13_17813596_17814633
          Length = 1038

 Score =  862 bits (446), Expect = 0.0
 Identities = 461/466 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtgcctggattacctattcttgagactcccctatagaatcagtttatttccaaaaca 60
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 466 tctgtgcctggattacctattcttgagactcatctatagaatcagtttatttccaaaaca 407

                                                                       
Query: 61  attggtaatagtagcaaatatgtgactaaaaatttaaaagattttactaaaaagttctgt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 406 attggtaatagtagcaaatatgtgactaaaaattgaaaagattttactaaaaagttctgt 347

                                                                       
Query: 121 acgaatcctgtgttgtagcctattctgttactctcctttttgtttatgtctggcttctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 acgaatcctgtgttgtagcctattctgttactctcctttttgtttatgtctggcttctac 287

                                                                       
Query: 181 aaatagcatgtttctgcatcctttttcaaaattcctgtttagtgtacagtgtgctatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aaatagcatgtttctgcatcctttttcaaaattcctgtttagtgtacagtgtgctatagt 227

                                                                       
Query: 241 tggtttaaaaaagttattctaatagcttttattaatatatattcataattttatttattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tggtttaaaaaagttattctaatagcttttattaatatatattcataattttatttattg 167

                                                                       
Query: 301 attattcagaagacaaaaatatttcatctgtagggtacagcagttcatatgcgggcacag 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 166 attattcagaagacaaaaatagttcatctgtagggtacagcagttcatatgcgggcacag 107

                                                                       
Query: 361 cagctatgacaatatgcacaaggcccacttcagatcaagccagacaaaatcccagcttgg 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 cagctgtgacaatatgcacaaggcccacttcagatcaagccagacaaaatcccagcttgg 47

                                                         
Query: 421 agggaaggagttagtcatgaaagctcactcccagctgaggagatat 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  agggaaggagttagtcatgaaagctcactcccagctgaggagatat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)