Query= MSMg01no112_m24.b1 MSMg01no112_m24.b1 CHROMAT_FILE:
MSMg01no112_m24.b1 PHD_FILE: MSMg01no112_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:05 2005
(492 letters)
>mm_chr13_73051920_73052811
Length = 892
Score = 936 bits (484), Expect = 0.0
Identities = 490/492 (99%)
Strand = Plus / Minus
Query: 1 taggaacagtagctgatgccacaatttggaaaacagtgtgaaagatccttaggaaattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 taggaacagtagctgatgccacaatttggaaaacagtgtgaaagatccttaggaaattaa 821
Query: 61 aaatagagcttccctgtgatacagaaatccatatttttatgcttactcaaactaaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 aaatagagcttccctgtgatacagaaatccatatttttatgcttactcaaactaaattaa 761
Query: 121 atcagcaccttatgaggacatctgggttcatgttcccagcagctttattctcaaagataa 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 760 atcagcaccttatgaggacatctgggttcatgttcccagcagctctattctcaaagataa 701
Query: 181 gtatgaaaagtgcaggttgttaggttaagggcattgtgagatagaatggagtgttattca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gtatgaaaagtgcaggttgttaggttaagggcattgtgagatagaatggagtgttattca 641
Query: 241 gacttaaaagatgaacccaaaagacaagatatgagagaagcaaggtagatagccagggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gacttaaaagatgaacccaaaagacaagatatgagagaagcaaggtagatagccagggaa 581
Query: 301 atgttccatataatataaatgttctacaacattggatgtttgctaccctcactacataca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atgttccatataatataaatgttctacaacattggatgtttgctaccctcactacataca 521
Query: 361 ccttcagggaaacacaggagtggatgactcctatatcaatgcagggcaccatattttatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccttcagggaaacacaggagtggatgactcctatatcaatgcagggcaccatattttatg 461
Query: 421 cttggggcttcatctgcctctcggcctctgcttctgccattctctactctctttctcagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cttggggcttcatctgcctctcggcctctgcttctgccattctctactctctttctcagt 401
Query: 481 gatcctgagcct 492
|| |||||||||
Sbjct: 400 gaccctgagcct 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_m24.g1 MSMg01no112_m24.g1 CHROMAT_FILE:
MSMg01no112_m24.g1 PHD_FILE: MSMg01no112_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:05 2005
(369 letters)
>mm_chr13_72930688_72931453
Length = 766
Score = 663 bits (343), Expect = 0.0
Identities = 360/367 (98%), Gaps = 3/367 (0%)
Strand = Plus / Plus
Query: 1 cctggagcttctccgctccagccctggtagcatagggctctgtctgacttcaattgccct 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cctggagcttctccgctccagccctggtagcatagggctctgtctggcttcaattgccct 260
Query: 61 actgttataaaggttgtgcttcatatatctgaagggaagcccatttcacagctacttaag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ---gttataaaggttgtgcttcatatatctgaagggaagcccatttcacagctacttaag 317
Query: 121 taaagtcttagctcctggaaaatgaaatgctagactatagagagggactggatgctggag 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taaagccttagctcctggaaaatgaaatgctagactatagagagggactggatgctggag 377
Query: 181 tttctgagaacactgtaaatactgcccagggtttcatcagaaatcactgcaaatggcagg 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttctgagaacactgtaaataatgcccagggtttcatcagaaatcactgcaaatggcagg 437
Query: 241 tagggtggtacacacctttattctcagcacttggaatgcagaagcaggttgttctcagag 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tagggtggcacacacctttattctcagcacttggaatgcagaagcaggttgttctcagag 497
Query: 301 tttgaagccatcctggtctacaaagttccagggcagccagggctacagaaagaacccctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttgaagccatcctggtctacaaagttccagggcagccagggctacagaaagaacccctg 557
Query: 361 tctcaca 367
|||||||
Sbjct: 558 tctcaca 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 766
Length adjustment: 9
Effective length of query: 360
Effective length of database: 757
Effective search space: 272520
Effective search space used: 272520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
