Query= MSMg01no113_m04.b1 MSMg01no113_m04.b1 CHROMAT_FILE:
MSMg01no113_m04.b1 PHD_FILE: MSMg01no113_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:17 2005
(350 letters)
>mm_chr13_30400266_30401011
Length = 746
Score = 600 bits (310), Expect = e-176
Identities = 339/350 (96%), Gaps = 4/350 (1%)
Strand = Plus / Plus
Query: 1 gttttacactctggagcaacatttattttttaagattcaggaatcgttgggaagtttgct 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 201 gttttacactctggagcaacatttattttttaagattcaggaattgttgggaagtttgtt 260
Query: 61 ggtatgtgagttattgccatgtgatgacattcctatgccagcatagacatttaagttcta 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ggtatgtgagttattgccatgtgatgacattcctatgccagcataggcatttaagttcta 320
Query: 121 tctactgggccattctgaaaaatatgaactatttgaattttgtataaagagaagtttaaa 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tctactgggccattctgaaaaatatgaactatttgaattttgtgtaaagagaagtttaaa 380
Query: 181 atattttaatattctgccacaaacgaaaaacctattcctggcttcatgatgtcaaatcac 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattttaatattctgacacaaacgaaaaacctattcctggcttcatgatgtcaaatcac 440
Query: 241 tgccctgatattatatgtgttgtaattataacttcaaaaaaaaataaaagacttgacaac 300
||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 441 tgccctgatattagatgtgttgtaattataacttcaaaaaaaaa---aagacttgataac 497
Query: 301 aattaaaaagaaaatcatacactctagaaatagtcaccagttttatttaa 350
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 498 aattaaaaagaaaat-atacactctagaaatagtcaccagttttatttaa 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 746
Length adjustment: 9
Effective length of query: 341
Effective length of database: 737
Effective search space: 251317
Effective search space used: 251317
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_m04.g1 MSMg01no113_m04.g1 CHROMAT_FILE:
MSMg01no113_m04.g1 PHD_FILE: MSMg01no113_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:17 2005
(187 letters)
>mm_chr13_30582921_30583504
Length = 584
Score = 288 bits (149), Expect = 1e-82
Identities = 177/187 (94%), Gaps = 3/187 (1%)
Strand = Plus / Minus
Query: 1 atgtgacaatgggaatcgcaaactgatactgaactgtagtttgctttccttctgtcctat 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 atgtgacaatgggaatcgcaaactgatgctgaactgtagtttgctttccttctgtcctat 325
Query: 61 gacaatgtatcagccaccccgagggaccaatgaggaacttgatgtttatatttttcggtg 120
||||| || ||| ||||||| ||||||||||||||||| ||||||||||||||| |||||
Sbjct: 324 gacaacgtgtcaaccacccccagggaccaatgaggaacgtgatgtttatatttt-cggtg 266
Query: 121 gtaaagccagcactgagacttaagttagcctttgagactgggggttaaaaaattggttct 180
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaaggccagcactgagactt--gttagcctttgagactgggggttaaaaaattggttct 208
Query: 181 gagaaag 187
|||||||
Sbjct: 207 gagaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 584
Length adjustment: 8
Effective length of query: 179
Effective length of database: 576
Effective search space: 103104
Effective search space used: 103104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
