Query= MSMg01no113_o07.b1 MSMg01no113_o07.b1 CHROMAT_FILE:
MSMg01no113_o07.b1 PHD_FILE: MSMg01no113_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:27 2005
(590 letters)
>mm_chr13_57529292_57530287
Length = 996
Score = 1089 bits (563), Expect = 0.0
Identities = 582/591 (98%), Gaps = 6/591 (1%)
Strand = Plus / Minus
Query: 6 gaattcattttctttctt-aaaaaaataagatctcgacaccccccccccc-----gcgcc 59
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 796 gaattcattttctttcttaaaaaaaataagatctcgacaccccccccccccccctgcgcc 737
Query: 60 caaaggtgactgtgcttgcatgacttgcatacacacacctttcagtctagtgtctggttg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 caaaggtgactgtgcttgcatgacttgcatacacacacctttcagtctagtgtctggttg 677
Query: 120 tataccaaaaacaccttagataagcaatggcttttagtcagttgctccacaccgagaaca 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 676 tataccaaaaacaccttagataagcaatggcttttagtcagttgctccagaccgagaaca 617
Query: 180 caaaccggggtatgaaattcctcttagagtccggtttgcactagctcttcgtgtgtgtgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 caaaccggggtatgaaattcctcttagagtccggtttgcactagctcttcgtgtgtgtgt 557
Query: 240 gtagcctgcatcccggggaggctcttctatgcggtctcagagtgactggaagcctttttg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gtagcctgcatcccggggaggctcttctatgcggtctcagagtgactggaagcctttttg 497
Query: 300 atttggatgagcctccatttgcctaaattgtttttacccacagaagccatgcaattccca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atttggatgagcctccatttgcctaaattgtttttacccacagaagccatgcaattccca 437
Query: 360 cgtgggcagcttcacaagccatttcttcacttccgctcacagctcccctcaggatacagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cgtgggcagcttcacaagccatttcttcacttccgctcacagctcccctcaggatacagt 377
Query: 420 gtacccacctgcggcagcttccttccctatccacccaagggctttttcctaccgtgttcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtacccacctgcggcagcttccttccctatccacccaagggctttttcctaccgtgttcc 317
Query: 480 ccactgagcccctgctccccaagaagacagcatcattataaagcttagaagataatttag 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 316 ccactgagcccctgctccccaagaagacagcatcattataaagcttagaagaaaatttag 257
Query: 540 ggttcttcagcgtctcctttgaccccctttctatccacaaatcatgaccca 590
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ggttcttcagtgtctcctttgaccccctttctatccacaaatcatgaccca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 996
Length adjustment: 10
Effective length of query: 580
Effective length of database: 986
Effective search space: 571880
Effective search space used: 571880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_o07.g1 MSMg01no113_o07.g1 CHROMAT_FILE:
MSMg01no113_o07.g1 PHD_FILE: MSMg01no113_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:27 2005
(387 letters)
>mm_chr13_57427881_57428668
Length = 788
Score = 677 bits (350), Expect = 0.0
Identities = 373/388 (96%), Gaps = 13/388 (3%)
Strand = Plus / Plus
Query: 1 aatatatagacctgactgggtgcaaactcacaaagattttcctgaatgcatctgcttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aatatatagacctgactgggtgcaaactcacaaagattttcctgaatgcatctgcttcta 272
Query: 61 gaatgctgggactaaaggtgtgtactttctctctctctctctctctctctctctctctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaatgctgggactaaaggtgtgtactttctctctctctctctctctctctctctctctct 332
Query: 121 ctctctctctctctctctctctctctctctctctcatatttctaagccaaaa-tatttgg 179
||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 333 ctctctctctctctctctctctc------------atatttctaagccaaaaatatttgg 380
Query: 180 ccgcagttgttattgttactagtctcagtttatctttctccatgtactgtcacatttccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgcagttgttattgttactagtctcagtttatctttctccatgtactgtcacatttccc 440
Query: 240 ctgaaccttctgagagtgacttgcagacatctagaaatttgaagaaggcatctctcataa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaaccttctgagagtgacttgcagacatctagaaatttgaagaaggcatctctcataa 500
Query: 300 tcataattccttaccctcgtcttcagagaatcccacgtggctgcatcaggactatacaac 359
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 tcataattccttaccctcgccttcagagaatcccacgtggctgcatcaggactacacaac 560
Query: 360 atttgccatctctccggtgtctctcatt 387
||||||||||||||||||||||||||||
Sbjct: 561 atttgccatctctccggtgtctctcatt 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 788
Length adjustment: 9
Effective length of query: 378
Effective length of database: 779
Effective search space: 294462
Effective search space used: 294462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
