BAC Information

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BAC

Clone NameMSMg01-114H21
Chromosome13 (Build37)
Map Location 62,671,013 - 62,671,357
singlet/doubletsinglet
Overlap genenone
Upstream geneCts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503
Downstream geneLOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114H21.T7 (MSMg01no114_h21.b1)MSMg01-114H21.TJ (MSMg01no114_h21.g1)
ACCAG326360AG326361
length719758
length of high quality
(start - end)
238 (68 - 305)333 (74 - 406)
definitionCHROMAT_FILE: MSMg01no114_h21.b1 PHD_FILE: MSMg01no114_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:11 2005CHROMAT_FILE: MSMg01no114_h21.g1 PHD_FILE: MSMg01no114_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:11 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGATCCGCGGAATTCA
GGACCTTCCCAACACAGTCAGTGGCCCTTACCGGCTGAGCAATGTTTCCA
GCTCTGCGGTGAGCCATTCTTACAAATCCACTATCTGCATGCATAGAAAG
ATCCATGCTATGAGTTCTGTTCCCATGGAAAAACTTTACTAATACAGATA
TGTTTTTTCACCTTCCCACGTAGGAAGATGTGCTGGCTAACAATAGTGCT
CCATAGTGATTGGAATCCATCCCCTGCTTTTGTCCCAAGGTTGTCTGGAA
TCTCATGCTGAAATGTTTAAATAAACTTCATTTCTGGAGAATCATAATGA
AAGGTTTTGATAAACTCCACTTATCTCCTTTAAGGAGCCCATTTGTCTCC
ATTTGCCAGACAGGGCCTGGATTTTAAGACCGCCATAAAGCATCAGCTTC
AGGAACAGGCCACAGTAACAGAAGGAAAGTCGTAAGACACCAGCTCTAGG
AACAGATCTTAAATCCAGAACAAATTCATAATCCACAGAGACCAGCCCAA
AAAACAAGGGGTGATATCCTATCTCACAATGGGCCATCTGCACTGGGCAG
CCCTATTTCATCACGTGTCTAGAAGTCCACGACAGAGGGATGCAGACCAC
CGATTACTTGTGACCCCCCATTACCCACCAATGAAATTTTTTATACCCCA
CACTGTTTCCCTGGTCCTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGGAATCTCAAGATCAGAGACATCCC
CTCACCACAGGACCAAACCCCAAACGATTAGCAGCTCTCTCAAGCATATG
CCTGGTTAAAGGGAAGCAGTTCTGGTTTTTGTTTTTTTAGGTTTGTTTGT
TTGTTTGTTTGTTTTTGAGACAGGGCTTCTCTGTATAGCCCGGGCTGTCC
TGGAACTCACTTTGTAGACCTGGCTGGCCTCCAACTCAGAAATCTGCCTG
CCTCTGCCTCCCAAGTGCTGAGATTAAAGGAGTACGCCACCATGCCCAGC
TTTGTTTTTGTTCTTAAACAAATACCTCAAGACCTTACGGAAAGTTCCTG
AGTCCTATACCACAGGCTGTTACAGGCTCTGCCAAGCATGTATCTGGAAT
TGAGAAGGACCTATGTCATTCTCCATCCACGAAGGCCTCATGGACCGCCT
TGCTTGATCCAGGACCATCCTTACCACAACCGCGTTTCTTCCCCTCAATT
GGCTCCACCAGACGTCTTGCCCACGTGGCAGAATCACCCCTCTCCCCATA
AAAAAACTGCATCCTTTAACGCCTACCCCGCCCCAACGTTGTTTGTGACT
GCCCACCGCTCCCTTGCCCATATCCTTCCCCAATCCCCTTTGACCTGGAC
CTGGTCCTACTGCCCCTTCCGCCAATGTCCCTCCCCCGTTCCTTGTTCCC
CCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_h21.g1 MSMg01no114_h21.g1 CHROMAT_FILE:
MSMg01no114_h21.g1 PHD_FILE: MSMg01no114_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:11 2005
         (333 letters)



>mm_chr13_62670813_62671545
          Length = 733

 Score =  578 bits (299), Expect = e-169
 Identities = 328/345 (95%), Gaps = 12/345 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggaatctcaagatcagagacatcccctcaccacaggaccaaaccccaaacgattagca 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 201 ttggaatctcaagatcagagacatcccctcaccacaggaccaagccccaaaccattagca 260

                                                                       
Query: 61  gctctctcaagcatatgcctggttaaagggaagcagttctggtttttgtttttttaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctctcaagcatatgcctggttaaagggaagcagttctggtttttgtttttttaggtt 320

                                                                       
Query: 121 tgtttgtttgtttgtttgttt------------ttgagacagggcttctctgtatagccc 168
           |||||||||||||||||||||            ||||||||||| |||||||||||||||
Sbjct: 321 tgtttgtttgtttgtttgtttgtttgtttgtttttgagacagggtttctctgtatagccc 380

                                                                       
Query: 169 gggctgtcctggaactcactttgtagacctggctggcctccaactcagaaatctgcctgc 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggctgtcctggaactcactttgtagacctggctggcctccaactcagaaatctgcctgc 440

                                                                       
Query: 229 ctctgcctcccaagtgctgagattaaaggagtacgccaccatgcccagctttgtttttgt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgcctcccaagtgctgagattaaaggagtacgccaccatgcccagctttgtttttgt 500

                                                        
Query: 289 tcttaaacaaatacctcaagaccttacggaaagttcctgagtcct 333
           ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tcttaaataaatacctcaagaccttagggaaagttcctgagtcct 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)