Query= MSMg01no114_j12.b1 MSMg01no114_j12.b1 CHROMAT_FILE:
MSMg01no114_j12.b1 PHD_FILE: MSMg01no114_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:19 2005
(475 letters)
>mm_chr13_94193520_94194396
Length = 877
Score = 866 bits (448), Expect = 0.0
Identities = 466/473 (98%), Gaps = 2/473 (0%)
Strand = Plus / Plus
Query: 5 gaattctaggagcaatttctagaactgtaaaaacatttttaaaga--tgttatgcaatat 62
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattctaggagcaatttctagaactgtaaaaacatttttaaagacatgttatgcaatat 264
Query: 63 ttatttttaaaatgtatagacctaatcaaacaggttacagaacccttttcaaacaacaat 122
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 265 ttatttttaaaatgtatagacctaatcaaacaggttacagaaccccttccaaacaacaat 324
Query: 123 ctgagacatttgcaatctggcatcctacagatggcctgagtcagtcaacttcctattatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgagacatttgcaatctggcatcctacagatggcctgagtcagtcaacttcctattatt 384
Query: 183 ttacttcaacaatgcccacaattgtgatttctatagggaaccattcttttcttattattt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacttcaacaatgcccacaattgtgatttctatagggaaccattcttttcttattattt 444
Query: 243 tattatctgaataataccctgaacactataattttgcttgtttttaacttgactggaata 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tattatctgaataataccctgaacactataattttgcttgtttttaacttgactggaata 504
Query: 303 atgtataccatctatatcaagtatacatttggctttgatttgctccttgaggaattcacc 362
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 atgtataccatgtatatcaagtatacatttggctttgatttgctccttgagggattcacc 564
Query: 363 caaattgctgtcttaagctagccccctttctcttgntgtccccgactgtatgtaggaata 422
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 caaattgctgtcttaagctagccccctttctcttgctgtccccgactgtatgtaggaata 624
Query: 423 ctttgttcacttacctacggataagacactggattgctaccactaggacactt 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctttgttcacttacctacggataagacactggattgctaccactaggacactt 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 877
Length adjustment: 10
Effective length of query: 465
Effective length of database: 867
Effective search space: 403155
Effective search space used: 403155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_j12.g1 MSMg01no114_j12.g1 CHROMAT_FILE:
MSMg01no114_j12.g1 PHD_FILE: MSMg01no114_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:19 2005
(517 letters)
>mm_chr13_94241732_94242648
Length = 917
Score = 938 bits (485), Expect = 0.0
Identities = 516/543 (95%), Gaps = 26/543 (4%)
Strand = Plus / Minus
Query: 1 tcagttatttataaatacgcactttcattaaaaaggtgtcagaaacctaagactggatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tcagttatttataaatacgcactttcattaaaaaggtgtcagaaacctaagactggatat 583
Query: 61 tagaatttacttaacttgtagaaatgaactgtagacattttgagactctaacctgaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tagaatttacttaacttgtagaaatgaactgtagacattttgagactctaacctgaaagg 523
Query: 121 caggaaagaactagatgtcatggttgtcccaccagtttggactgttgcagtgttgcacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 caggaaagaactagatgtcatggttgtcccaccagtttggactgttgcagtgttgcacct 463
Query: 181 ttgcaattcaggattgacgagttaagattctattaatcaacacggtgagtattgagtatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttgcaattcaggattgacgagttaagattctattaatcaacacggtgagtattgagtatc 403
Query: 241 cacttgagaaaagctgtagactgtcactgtcactccatttttcttaggaaccagtgggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cacttgagaaaagctgtagactgtcactgtcactccatttttcttaggaaccagtgggag 343
Query: 301 gaggaacatttatttacatgagtaacttcctttaaggtaaaaatgatatttccctatact 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 342 gaggaacatttatttacatgagtaacttcctttaagggaaaaatgatatttccctatact 283
Query: 361 tgctgttccaagctgttacctctcacaccattcaacctctactgttttattctttgggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgctgttccaagctgttacctctcacaccattcaacctctactgttttattctttgggat 223
Query: 421 tcttaagaatgct--------------------------tattgtatacaggcgtatttc 454
||||||||||||| |||||||||||||||||||||
Sbjct: 222 tcttaagaatgcttattgtatatatatattgtgtatatatattgtatacaggcgtatttc 163
Query: 455 ctagtaattcactgcacccagttcttgagttcatagtgtgtcagatgactatggtaagtg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ctagtaattcactgcacccagttcttgagttcatagtgtgtcagatgactatggtaagtg 103
Query: 515 gaa 517
|||
Sbjct: 102 gaa 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
