BAC Information

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BAC

Clone NameMSMg01-115F01
Chromosome13 (Build37)
Map Location 36,347,024 - 36,347,328
singlet/doubletsinglet
Overlap geneFars2
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, LOC100041590
Downstream geneLOC666758, Nrn1, F13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115F01.T7 (MSMg01no115_f01.b1)MSMg01-115F01.TJ (MSMg01no115_f01.g1)
ACCAG326976AG326977
length717726
length of high quality
(start - end)
505 (46 - 550)314 (85 - 398)
definitionCHROMAT_FILE: MSMg01no115_f01.b1 PHD_FILE: MSMg01no115_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:14 2005CHROMAT_FILE: MSMg01no115_f01.g1 PHD_FILE: MSMg01no115_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCTAATGGCTGAGACGCACCTGAAAAGAATG
TTCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGTTCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTAA
GAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGTTCCAACTGGTAAGAAGGAAATATGCTCCACTAT
GCTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGGAAGAACCCAGAT
GTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAACG
GAGTACTACTCAGCTATTAAAAAGAATGACTTTATGAAATTCCTAGGCCA
ATGGATGGACCTGGAGGGCATCACCCTGAGTGAGGCACCCCAACCACCAA
AGAACTCACATGATATGTACTCACTAACAAGTGGATATTAGCCCAGAAAC
TTAGTATACTTGACATATAAGACACCATTTGCCAAACACCTGAAACTGAA
GACCCACGAACACCCCG
AATTATTCCCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTGAAGCTTATT
TATATTAGAATATTGTATACCTGTCCTCCTTAATTACCTTTTTACTGTTA
TATTTACATTTATCAAGCCTGCCTCCACTGAAATCCTCACAATTCACTGC
ACATCTCATTCTTTCTATTTCTTTCTCCTTGGTGTGGAATTTTTCCTTAT
GTGTTTCTACAGGCTGTGTCTGCTGGGGATGACCTCCTTAGGCTTGCTTT
CTCTGACACACTGTTCCTCCTTCATTATCATGAAGGATATTTTTATTGAA
TATAGACTCGCGATCTGATGGCCATTTCCTTTTTTTTTTTTTAGCATTTC
AAACTGTTTTCTTCTACCTGTTGTTACCCGAAAAAAAAATCATAATTTCA
ATGCCTAACAATTGCTCATCTAACTATACAGTATTGCCCTTTTATTTATT
TATTAGTTAACCTTCAGGAACCCTTTCTATTCTTGTTGTTCTCAAATACG
AATGTTCTATTTCTCCCCATTGTTTCCCCCACACCTTTTCTTCACCCTCT
TTCTTTCTTTTCTGCCCTTTACTTTTATTCTCCCCTTTGCCTTCTAGCCT
GTCTTTTCACATCCACAAATAACTTTTTCCCCGACGGCCCTTGTCTTCCT
TATTCTTTTCTCCCCTTTTTATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_f01.g1 MSMg01no115_f01.g1 CHROMAT_FILE:
MSMg01no115_f01.g1 PHD_FILE: MSMg01no115_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:14 2005
         (314 letters)



>mm_chr13_36346824_36347536
          Length = 713

 Score =  491 bits (254), Expect = e-143
 Identities = 293/308 (95%), Gaps = 6/308 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcttgaagcttatttatattagaatattgtatacctgtcctccttaattacc--tttt 58
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||
Sbjct: 201 tttcttgaagcttatttatattagaatgttgtatacctgtcctccttaattacctttttt 260

                                                                       
Query: 59  tactgttatatttacatttatcaagcctgcctccactgaaatcctcacaattcactgcac 118
           ||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ta---ttatatttacattcatcaagcctgcctccactgaaatcctcacaattcactgcac 317

                                                                       
Query: 119 atctcattctttctatttctttctccttggtgtggaatttttccttatgtgtttctacag 178
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 318 atctcattctttctatttccttctccttggtgtggaaattttccttatgtgtttctacag 377

                                                                       
Query: 179 gctgtgtctgctggggatgacctccttaggcttgctttctctgacacactgttcctcctt 238
           ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct: 378 gctgtgtctgctggggatggcctccttaggcttgctttctctgacacaccgttcttcctt 437

                                                                       
Query: 239 cattatcatgaaggatatttttattgaatatagactcgcgatctgatggccatttccttt 298
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 438 cattatcatgaaggatatttttattgaatatagactcgtgaactgatggccatttccttt 497

                   
Query: 299 -ttttttt 305
            |||||||
Sbjct: 498 attttttt 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)