BAC Information

Click to search

BAC

Clone NameMSMg01-116I21
Chromosome13 (Build37)
Map Location 13,495,449 - 13,495,808
singlet/doubletsinglet
Overlap genenone
Upstream geneHeatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b
Downstream geneLOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116I21.T7 (MSMg01no116_i21.b1)MSMg01-116I21.TJ (MSMg01no116_i21.g1)
ACCAG327906AG327907
length711758
length of high quality
(start - end)
368 (54 - 421)360 (133 - 492)
definitionCHROMAT_FILE: MSMg01no116_i21.b1 PHD_FILE: MSMg01no116_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:50 2005CHROMAT_FILE: MSMg01no116_i21.g1 PHD_FILE: MSMg01no116_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:51 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCGGGAAGAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGCTTTACGACTATTTTCTTTTAGGTTTGTTGAAAGA
TTACTTTCTTGCCTTTTCTAGGGGGTTGTTTCCCCCCTTGTGTTGGAGTT
TTCAGTTTATTATCCTTTGAAGGACTGGATTCGTGGAAAGATACTGTGTA
AATTGGGTCTTGACATGGAATACTTTGGTTTCTCCATATATGGTAATTGA
GAGTTTTGCCTGGGCTGGCATTTGTGTTCTCTCGGGGTCTGTATGACATC
TGTCCATGGTCTTCTGGCGTCCATAGTTTTGGGTGAGATTTCAGGTGGAA
TTCTGATAGATCTACCTTTATATTACTTGCCCATTTTTCCCTTACTGCTT
TTAATATTCTTTGTTTTGTGCATTTGGCGTTTTGATTATTATGTGATGGG
AGGAATTTCTTTTCTGGTCTAAACTATTTGTAATTCTTCAGGTTTCTTGT
ATGTTCATGGGCATCTCTTTCATTATGTTAGGGAAGTTTTCTTCTATAAC
TTTGTTGAACAAATTTACTGACCCTATTATATCGAACATCTTCATTCCTT
CTCTACATCCATTTATCCCTATTGCTGTTCCTCCCATAGCGTCTTGCTTT
TCCTTGTACGGTTTTGGCTTAATAGCTTTTTACATTTTTCTTTTTTCTTC
TGCTCCTTGTA
TCTTTTTTTTTTTTTTTTTTCTTNCTTTTNTNCTTTCCTNNCCNTCCTTN
NNNNNNNNTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAAAGACGTTGTTAT
AGGACTGGGGAAGAAGGGAATCTGGAAGGCCTGGGGCTCTTCCCAGGAGA
AGTGGAGATCCAGGAATTAGGAGGCAATCTGGGGAGTCAGTGGAACCCAA
AGCCAAGCTGGGTGTGACAACGAAGGCCTGTGCTTCCAGCACACCAGAGG
CGATAGCAGGCAGATCAACAGTTCAAGGACAGCCTCTGCTACACTGCAAA
TTTGAGGCCAGTTTGGACTATGTGAGGCCATGTCTCAGGAACCAGGAGAA
AGAATATAAAATCACCCTGTGGCTTCAGCGGTGACCTTTAATACAGGATG
TCACCTCACCACGGCTTGGCTGCTGGGACATGACTGCTAAGGGTCCAGCA
AGAGCGCCTTATTAGGTAGAGAGCAAGAAGCATCTTGCTGTGCCCCTGTG
GGTGAGTGCAGATGCGCTTAGTCAGTGAGTCCTGGAAGCAGTGGGGTCCA
CAAGGTAGGAACAAGAAATGCATGGCTGTGGGCATGGTAACCACGGACCC
GACCAATCCCTGATTTGCCAAAAGCCTGTGAGAATCCCAACTTTCTGCGC
CAGTGATCCCCAGTCACTATGAACATGGTGGACGCTGGATATGTGCGCCC
TTAGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_i21.g1 MSMg01no116_i21.g1 CHROMAT_FILE:
MSMg01no116_i21.g1 PHD_FILE: MSMg01no116_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:51 2005
         (360 letters)



>mm_chr13_13495249_13496008
          Length = 760

 Score =  673 bits (348), Expect = 0.0
 Identities = 357/360 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaaagacgttgttataggactggggaagaagggaatctggaaggcctggggctcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaaagacgttgttataggactggggaagaagggaatctggaaggcctggggctcttc 260

                                                                       
Query: 61  ccaggagaagtggagatccaggaattaggaggcaatctggggagtcagtggaacccaaag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggagaagtggagatccaagaattaggaggcaatctggggagtcagtggaacccaaag 320

                                                                       
Query: 121 ccaagctgggtgtgacaacgaaggcctgtgcttccagcacaccagaggcgatagcaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagctgggtgtgacaacgaaggcctgtgcttccagcacaccagaggcgatagcaggca 380

                                                                       
Query: 181 gatcaacagttcaaggacagcctctgctacactgcaaatttgaggccagtttggactatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcaacagttcaaggacagcctctgctacactgcaaatttgaggccagtttggactatg 440

                                                                       
Query: 241 tgaggccatgtctcaggaaccaggagaaagaatataaaatcaccctgtggcttcagcggt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 tgaggccatgtctcaggaaccaggagaaagaatataaaatcaccctgtggcttcagtggt 500

                                                                       
Query: 301 gacctttaatacaggatgtcacctcaccacggcttggctgctgggacatgactgctaagg 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacctttaatacaggatgccacctcaccacggcttggctgctgggacatgactgctaagg 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)