Query= MSMg01no116_j03.b1 MSMg01no116_j03.b1 CHROMAT_FILE:
MSMg01no116_j03.b1 PHD_FILE: MSMg01no116_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:52 2005
(501 letters)
>mm_chr13_83784251_83785151
Length = 901
Score = 938 bits (485), Expect = 0.0
Identities = 497/501 (99%), Gaps = 1/501 (0%)
Strand = Plus / Plus
Query: 1 gctgaaactttcgtcatttcctgacttcattcccaaaatgtcaccaggttgcttcttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gctgaaactttcgtcatttcctgacttcattcccaaaatgtcaccaggttgcttcttctc 261
Query: 61 ttagagccttccataaaaaatgaactctttttttttaaattaaaataaaaacccttgttt 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 262 ttagagccttccataaaaaatgaactctttttttt-aaattaaaataaaaacccttgttt 320
Query: 121 ttatttataacatctgaaaatcattttatttcaaattcttaatggggttcaggaattcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatttataacatctgaaaatcattttatttcaaattcttaatggggttcaggaattcag 380
Query: 181 tgcacagtaatatgactgcaatctagaaagtcaaatcctcatccaaaggcattgttcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacagtaatatgactgcaatctagaaagtcaaatcctcatccaaaggcattgttcaag 440
Query: 241 aatgtcttttcagcaaactatggggtagtccttgcaaattgactatatacagtttgagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgtcttttcagcaaactatggggtagtccttgcaaattgactatatacagtttgagat 500
Query: 301 cattatttaaagatatacgcaggtttgagacataaaatggcaccaccgtttgttaaaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattatttaaagatatacgcaggtttgagacataaaatggcaccaccgtttgttaaaaag 560
Query: 361 ctaacttgcagtcttagaacttttaaaaagtcaaatgcaaattgggttgatggcggagac 420
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 561 ctaacttgcagtcttagaacttttaaaaagtcaaatgtaaattgggttgatggcggtgac 620
Query: 421 agtgtttgcatcaatatggccgctcctatttaactagtcagtgtatggaaagtattttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgtttgcatcaatatggccgctcctatttaactagtcagtgtatggaaagtattttca 680
Query: 481 aaatgactctaataaaagcag 501
|||||| ||||||||||||||
Sbjct: 681 aaatgattctaataaaagcag 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_j03.g1 MSMg01no116_j03.g1 CHROMAT_FILE:
MSMg01no116_j03.g1 PHD_FILE: MSMg01no116_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:52 2005
(487 letters)
>mm_chr13_83903206_83904092
Length = 887
Score = 833 bits (431), Expect = 0.0
Identities = 473/487 (97%)
Strand = Plus / Minus
Query: 1 aactttcgtgaagtagtaagcttgcaagcatcacagaaggaagcttgagaactaaaagaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 687 aactttcgtgaagtagtaagcttgcaagcatcacaggaggaagcttgagaactaaaagaa 628
Query: 61 aggcaaagtgacagaccaaggtagttctgatttcaaccgtcttcaaggaaaaagcataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aggcaaagtgacagaccaaggtagttctgatttcaaccgtcttcaaggaaaaagcataga 568
Query: 121 acttgtttgggaatctaaactgctacaggtccagttggctatcaggcaatgtcacaatat 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 567 acttgtttgggaatctaaactgctacaggtccagttggatatcaggcaatgtcacaatat 508
Query: 181 taacaaattaacaaaatgtcccctttgatatgattcagcttttaaataaagaatgacaag 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 taacaaattaacaaaatgtaccctttgatatgattcagcttttaaataaagaatgacaag 448
Query: 241 ttgagttactcaaaattttaagtgtgacttacttcaattattactaaaataaaaaccagc 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttgagttacacaaaattttaagtgtgacttacttcaattattactaaaataaaaaccatt 388
Query: 301 ggctaacctctaatctataaattcaccttttattatataaagttgcatgctttgacaagt 360
||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 387 ggctaacctctaacctataaattcaccttttattataaaaagttacatgctttgacaagt 328
Query: 361 ttagtgcaacgtatttcatgaaacattttaagtatgttgactaaagcccaggttgagtac 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 327 ttagtgcaacgtatttcatgaaacactttaagtatgttgactaaagcccaggttgagtac 268
Query: 421 agcgcccaaacttaaactttatgaaacattagatttttgatgtctaagagcagaaaaatc 480
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 267 aacgcccaaacttaaactttatgaaacattagatttttgatgtctaagggcagaaaaacc 208
Query: 481 catatag 487
|| ||||
Sbjct: 207 cacatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
