TGCCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATATCCATATCGCAAATCACACAAAGTTACAAATTCTC
CAAAAAAAAAAAAAAAAAACTGGCATTTGAAAGAAAGTGCTGCCTTCTTA
CCTTCAATGCTGAATATTTGCTCCCCTAGAGTCCCAGCCTTCTCCAGAAG
AGCCGCTTCGTCGGCCACATTGAAAAAGTATCTCTCAGTTGGAGTACTAG
CAATTGCTTTTATTTCTTTGATTAAATTTTTAGTATCAAGAGCATTTCTG
TTTAAATACCCAAGAACCTCGAGAAAAGAGAGAGCATGGGGCAAAGGTCA
TGCTTAGTCTGCGTAACTTCCCCCATCTGTTCATTTCATCGTAAACTTTC
TTGCAAACGTTTCTGCAGCCATTTATTTAGTTGGCACGACTGAATACCAG
CAGGAAGAAGAGAGACAGTACAAACTGCAGACCTGGAAAGTGTCAGCCTG
TAGGGATGTGTAGCCATCAACTGCCAGACAAATCCAAACAGAAGTCACTT
ACTGCTATGCCGAACCTCAGTATCTCCTCATCATTGCATTGCTGGATCAC
AGTTTTCAGCTTTGACCCATCATGGGACTCGCCATCGGTCACAACTACCA
TGACTTTTGTAGCACCGGGGCGCCCGCCGGAAGTCTGTGAATAAGCCGTA
TCTCTGTGATGTATACAAT

NNTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGACTCCTTGGGATCTTT
TATCATATCAGCTAGAAATAAGAGTATTTTGACTTCTTTCTTTCTTATTT
ATATTCCCTTTATCTCCTTTTCCCCCATGATTCCTTTAGGTAATAATTCA
AGCATTGTGTTGAACAGGAGTAGAGAAAATATTCCTGATTTTGGTGGAAA
TACCTTGAGCTTTTCTTCATTTTCCATGATTTTAGCAGTGGGGTTATTGT
ATATTGCCTTTTCTGTATTAAGATACATCCTCTGTGTCCCTAGATTCTCC
TGTGCTTTTATCATTAGGGAGTTTGTATTTTTGTTTAAGATCTTTTCTGA
ATCTAATTAGATGATTGTGTCATTTCTGTACTCGAGTCTATTTCTGTTCC
ACCTTAGTTCTTGAGAAAGGATTCCTCACTGAATTTGAAGCTCACCATTT
TTACTAGCCTGGCTGGCCACTGAGCCCTTGGGATCTGCCTGTGTCTCCCT
TCCAACACTGGACTTACAGATTCATGCTGCCACACTCTATTTGAGTGTGG
GTGCTATAGCTCCAACCTCATATCCTTGAGTTTGCCTACTGAGTTCATTA
TCCAAGTTTTATAGCACGATTGCTCCCATCTCTGTAAGACAATTGTAATG
GCTAGTATAACGTA

Query= MSMg01no116_k03.b1 MSMg01no116_k03.b1 CHROMAT_FILE:
MSMg01no116_k03.b1 PHD_FILE: MSMg01no116_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:56 2005
         (588 letters)



>mm_chr13_115664967_115665954
          Length = 988

 Score =  978 bits (506), Expect = 0.0
 Identities = 559/584 (95%), Gaps = 12/584 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatccatatcgcaaatcacacaaagttacaaattctccaaaaaaaaaaaaaaa 64
           |||||||||||||||| |||||| | |||||||||||||||||||||||||         
Sbjct: 217 gaattcatatccatatggcaaattatacaaagttacaaattctccaaaaaa--------- 267

                                                                       
Query: 65  aaactggcatttgaaagaaagtgctgccttcttaccttcaatgctgaatatttgctcccc 124
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ---ctggcatttgaaagaaagtgctgccttcttaccttcaatgctgaatatttgctcccc 324

                                                                       
Query: 125 tagagtcccagccttctccagaagagccgcttcgtcggccacattgaaaaagtatctctc 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagagttccagccttctccagaagagccgcttcgtcggccacattgaaaaagtatctctc 384

                                                                       
Query: 185 agttggagtactagcaattgcttttatttctttgattaaatttttagtatcaagagcatt 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggttggagtactagcaattgcttttatttctttgattaaatttttagtatcaagagcatt 444

                                                                       
Query: 245 tctgtttaaatacccaagaacctcgagaaaagagagagcatggggcaaaggtcatgctta 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 tctgtttaaatacccaagaacctcgagaaaagagagagcagggggcaaaggtcatgctta 504

                                                                       
Query: 305 gtctgcgtaacttcccccatctgttcatttcatcgtaaactttcttgcaaacgtttctgc 364
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtctgtgtaacttcccccatctgttcatttcatcgtaaactttcttgcaaacgtttctgc 564

                                                                       
Query: 365 agccatttatttagttggcacgactgaataccagcaggaagaagagagacagtacaaact 424
           |||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct: 565 agccatttatttagttggcacgactgaaaatcagcaggaagcagagagacagtacaaact 624

                                                                       
Query: 425 gcagacctggaaagtgtcagcctgtagggatgtgtagccatcaactgccagacaaatcca 484
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcagacctggaaagtgtcagcatgtagggatgtgtagccatcaactgccagacaaatcca 684

                                                                       
Query: 485 aacagaagtcacttactgctatgccgaacctcagtatctcctcatcattgcattgctgga 544
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 aacagaagtcacttactgctatgccgaacctcagtatctcgtcatcattgcattgctgga 744

                                                       
Query: 545 tcacagttttcagctttgacccatcatgggactcgccatcggtc 588
           |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 745 tcacagttttcagcttcgacccatcatgggactcgccatcggtc 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)