BAC Information

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BAC

Clone NameMSMg01-117E23
Chromosome13 (Build37)
Map Location 75,923,390 - 75,923,527
singlet/doubletsinglet
Overlap genenone
Upstream geneCast, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2
Downstream geneLOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117E23.T7 (MSMg01no117_e23.b1)MSMg01-117E23.TJ (MSMg01no117_e23.g1)
ACCAG328475AG328476
length798717
length of high quality
(start - end)
139 (127 - 265)459 (70 - 528)
definitionCHROMAT_FILE: MSMg01no117_e23.b1 PHD_FILE: MSMg01no117_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:49 2005CHROMAT_FILE: MSMg01no117_e23.g1 PHD_FILE: MSMg01no117_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAAGGATCTTCCCAAGGCTGGCATGGGACTCTGCTGGTGTTTTCCACA
GAGGTGCAACATGATACACACCGCACGAAGAAACTAGGTCAGAATCGTCT
GGAGCTGCCTCACTCCCCAGCTAAAGGTCACTCTTAATCCTTCCACAGCT
CCCAGAACTCTGTGTGCGGTGGGGGGTTTTTTGTTTGTTTGTTTTGGGGG
TTCTGTTTTGTTTGATAGCATAATACAATACTAACTTAACCCACCATCTT
TTTTATTAAAGCCCTAATTTTTCTTTTATACAATCTTAACCCTCCTACAT
TTCTATATTTTTTTTTTTTTTCCCCCCCCCCCCCCCCTTTTTTTTATTTA
TTTTATATTTTTTTATTTTCTTATTAAACAACAAAAAAAAAATATCGCAA
GTGCGTGGGGGTATTTTATTATTTTTTACATTATTTAATATTTATTCTTA
TTTTATTATAAATTATATAAAACCATATCTCACTATTCTTATATCTATAC
TATTATAACTTCTCCCGCCATTAATTATTTATAGTACATCCTGTTATCAT
TGTCATCTCATCCACTATATATAACAAAATCTCAAAAACATTAGTAAACT
ATAAAATATCTACATTAATCACACTCCCTTTCCTATATGTATATATTACT
TTGTCATGTAATCCACTACGCCAATTATCATTGTATTCCCTTTAACTCCC
CTCACAACGACTTTTCAAATCTCTATTTNTTATCTATATATAATACAC
GATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGACTTTTATCATGAATGGG
TGTTGGATCTTGTCGAATGCTTTTTTCCACATCTAACGAGATGATCATGT
GGTTTTTGTCTTTGAGTTTGTTTATATACTGGATTACGTTGATGGATTTT
CGTATATTAAACCATCCCTGCATCCCTGGGATGAAACCTACTTGGTCAGG
ATGGATGATTGCTTTAATGTGTTCTTGGATTTGGTTAGTGAGAATTTTAT
TGAGGATTTTTGCATCTATATTCATAAGGGAAATTGGTCTGAAGTTCTCT
ATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTC
ATAGAATGAGTTGGGTAAAGTTCCTTCTACTTCTATTTTGTGGAATAGTT
TGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTTTA
CTAAACCCATCTGGTCCTGGGCTTGTTTTTTGTCTGGGAGACTGTTAATG
ACTGCTTTTATTTCTTTAGGGGATATAGGACTGTTTAGATCATTAACTTG
ATCCTGATTTAACTTTGGTGTCTGGTATCTGTCTAGAAAATTGTTCATTT
TGTCCAGGTTTTCCAGTTTTGTTGAATAAAGCCTTTTTGAAAAAGTATCT
GATGGCTGTTTTGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_e23.b1 MSMg01no117_e23.b1 CHROMAT_FILE:
MSMg01no117_e23.b1 PHD_FILE: MSMg01no117_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:49 2005
         (139 letters)



>mm_chr13_75923190_75923728
          Length = 539

 Score =  267 bits (138), Expect = 2e-76
 Identities = 138/138 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagaaactaggtcagaatcgtctggagctgcctcactccccagctaaaggtcactctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagaaactaggtcagaatcgtctggagctgcctcactccccagctaaaggtcactctta 260

                                                                       
Query: 61  atccttccacagctcccagaactctgtgtgcggtggggggttttttgtttgtttgttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccttccacagctcccagaactctgtgtgcggtggggggttttttgtttgtttgttttg 320

                             
Query: 121 ggggttctgttttgtttg 138
           ||||||||||||||||||
Sbjct: 321 ggggttctgttttgtttg 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)