BAC Information

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BAC

Clone NameMSMg01-117F03
Chromosome13 (Build37)
Map Location 53,824,372 - 53,824,737
singlet/doubletsinglet
Overlap genenone
Upstream geneAuh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760
Downstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117F03.T7 (MSMg01no117_f03.b1)MSMg01-117F03.TJ (MSMg01no117_f03.g1)
ACCAG328483AG328484
length706697
length of high quality
(start - end)
370 (134 - 503)366 (76 - 441)
definitionCHROMAT_FILE: MSMg01no117_f03.b1 PHD_FILE: MSMg01no117_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:50 2005CHROMAT_FILE: MSMg01no117_f03.g1 PHD_FILE: MSMg01no117_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCTCTGTTGCCCCAGACCTCAATGTCAATGAGATAGCAGC
TGGTCACCTCAGAACAGTCACGTCGCAGCCTCCACTTGTGAATGCATCTC
GCCCGGCAGGCTGGTACTGAAGTTCGCAGGTGTCATAGCTGGATAAGGCT
TTCTCTTATCCACATATGAGGCCTTTCCCTCCCAGCAGAGTGCAAGGCAT
CCCTGAAAAACATGAAAGCTACTGCCGGGGAGGTACCTCCAGTTCAGACT
CAGTTTGACTTCACTAGACCTTGCTGAAGTAATGTGTGGTGTCTTCAGCA
GTGAGATCTTATAAACTAGTTCCAGTGGGCAACCAAGAGGAACGGCAAAG
CCTGTGATGTTTGGGGCTGCTCTGGGACTCTCTCTCAGCACCTCCTAAAG
ATGTAGTCTACACTTGTCATTGTGACTTCTGTTTATGAACTCAGGGCTTT
TTGCATAGTACTAGAAGGCCATAGAGGAAATCTCATTGCTAACTCATTTT
TTTATTGGCTTCCTTTGTAGTGGGCTTTTATATAGCTTCCATTGGCCTTT
GTCTTGGTTAAGTCCTCTTGACCCTTAGTCTTTCCCATCTTCCATGCCCC
TCTTCTCAGATGTTTCTGACTGAATATCCCCCTCTCTCCTTTCATGTTCC
CTACAA
TTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTGCCACATCATCTGAACTCGCCT
GTTTAAAAAAAAAACTTAATTGGGTGGTTTCCTAAAACTGCAGGGCGCTG
TATAAATTATTCAAGAATTCATCACCAGAGAGGCCAGAGCAGGGACACAT
GGTGGCAGGCAGACAGACATGGTCCTGGAGAAGGAGCTTGAGAGTTCTAT
ATCTGGATCCACAAGCAGCAGGAAGAGAGAGACACTGGGCCTGGCTTGGG
CTTTTGAAACCTCAAAACCTACCCCCACCCCCCAGTGACACACTTCTTCC
AACAAGGCCACACTTCCTGATAGTGCCTCCGCCTAGTGATCAAATCTATG
AGCCTATGATTGGGGGGGGGGGGAATTTCCATGTAAACCACCACGAAAGT
ATTATTTTATTGTACAGTTGATTTGCATTTACTTACTAGCTACAAAGTAC
ATTTATGATTTATGTTCTTCCTCCTTCTCCTTTGCTCTATATAACTCCCG
ATCTTACAGATGCAGGCTAGTGCTCTACTACTACGCTCCATCCTCATCAT
GTATGCGTGCGTGTGTCTCTATCCATCTATCATTCAATCTATCTATCTTA
GCTATCTATTTATCTATCCACCAAATAAATTATTATATATACTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_f03.g1 MSMg01no117_f03.g1 CHROMAT_FILE:
MSMg01no117_f03.g1 PHD_FILE: MSMg01no117_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:50 2005
         (366 letters)



>mm_chr13_53824172_53824938
          Length = 767

 Score =  677 bits (350), Expect = 0.0
 Identities = 363/368 (98%), Gaps = 4/368 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgccacatcatctgaactcgcctgtttaaaaaaaaaa--cttaattgggtggtttcct 58
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 201 attgccacatcatctgaactcgcctgtttaaaaaaaaaaaacttaattgggtggtttcct 260

                                                                       
Query: 59  aaaactgcagggcgctgtataaattattcaagaattcatcaccagagaggccagagcagg 118
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaactgcaggg-gctgtataaattattcaagaattcatcaccagagaggccagagcagg 319

                                                                       
Query: 119 gacacatggtggcaggcagacagacatggtcctggagaaggagcttgagagttctatatc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gacacatggtggcaggcagacagacatggtcctggagaaggagcttgagagttctatatc 379

                                                                       
Query: 179 tggatccacaagcagcaggaagagagagacactgggcctggcttgggcttttgaaacctc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggatccacaagcagcaggaagagagagacactgggcctggcttgggcttttgaaacctc 439

                                                                       
Query: 239 aaaacctacccccaccccccagtgacacacttcttccaacaaggccacacttcctgatag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaacctacccccaccccccagtgacacacttcttccaacaaggccacacttcctgatag 499

                                                                       
Query: 299 tgcctccgcctagtgatcaaatctatgagcctatgattggggggggggggaatttccatg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 500 tgcctccgcctagtgatcaaatctatgagcctatgattgggggggggggca-tttccatg 558

                   
Query: 359 taaaccac 366
           ||||||||
Sbjct: 559 taaaccac 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 767
Length adjustment: 9
Effective length of query: 357
Effective length of database: 758
Effective search space:   270606
Effective search space used:   270606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)