Query= MSMg01no117_f23.b1 MSMg01no117_f23.b1 CHROMAT_FILE:
MSMg01no117_f23.b1 PHD_FILE: MSMg01no117_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:54 2005
(326 letters)
>mm_chr13_106962830_106963557
Length = 728
Score = 572 bits (296), Expect = e-168
Identities = 317/324 (97%), Gaps = 2/324 (0%)
Strand = Plus / Minus
Query: 5 ggaattctatcaataat-taccccattatccttgcc-atatcagttggagatctggatta 62
||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct: 528 ggaattctatcaataatgaaggccattatccttgccaatatcagttggagatctggatta 469
Query: 63 aatttgccataaacagttgtgttcttcagagagaaaaaagatttttgattaaagcaagta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aatttgccataaacagttgtgttcttcagagagaaaaaagatttttgattaaagcaagta 409
Query: 123 ccactgtattgattcttcaatcaataactattgtacagaggatctcagattaagaaatga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ccactgtattgattcttcaatcaataactattgtacagaggatctcagattaagaaatga 349
Query: 183 gcctttcatagttgggaagctggctcagtaattaaagttcttgttatgcacatacatgaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gcctttcatagttgggaagctggctcagtaattaaagttcttgttatgcacatacatgaa 289
Query: 243 catgtgcataaatatacatgcacaataggtattttatcttccataacttaaaacttggct 302
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 288 catgtgcataaatatacatgcacaataggtattttatctcccagaacttaaaacttggct 229
Query: 303 atgatacaatgaatatgttgctag 326
||||||||||||||||||||||||
Sbjct: 228 atgatacaatgaatatgttgctag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 728
Length adjustment: 9
Effective length of query: 317
Effective length of database: 719
Effective search space: 227923
Effective search space used: 227923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_f23.g1 MSMg01no117_f23.g1 CHROMAT_FILE:
MSMg01no117_f23.g1 PHD_FILE: MSMg01no117_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:54 2005
(514 letters)
>mm_chr13_106833287_106834200
Length = 914
Score = 839 bits (434), Expect = 0.0
Identities = 494/516 (95%), Gaps = 8/516 (1%)
Strand = Plus / Plus
Query: 1 ctgggctggaaacttgtgggaaat-aaaaacaatcttagatgcaagtgttacaataagaa 59
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 201 ctgggctggaaacttgtgggaaataaaaaaaaatcttagatgcaagtgttacaataagaa 260
Query: 60 tgcaaaaatacacttccaaggaaaacagtaagaaatgtgcgaagaacaggatcccacaag 119
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 261 tgcaaaaatacacttccaaggaaaacagtaataaatgtgtgaagaacaggatcccacaag 320
Query: 120 ggtgggatccaatcaaagaagtacaaaacctaagaaacagaaaaataacaaaggagacta 179
||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct: 321 ggtgggatccaatcaaagaagtacaaaacgtaa-aaacagaaaaataataaaggagacta 379
Query: 180 tctttaagtcaagtagagagaatataacataagcataaggagaagagagagaacagaatg 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctttaagtcaagtagaaagaatataacataagcataaggagaagagagagaacagaatg 439
Query: 240 gatatttgagggaataatatctaaaaataacctcaagttaaagtcagactccaaattaca 299
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 gatatttgagggaataataactaaaaataacctcaagttaatgtcagactccaaattaca 499
Query: 300 tattttaacaagttcagaataaacagaataaatttcaaaaagctacacatagctacattg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tattttaacaagttcagaataaacagaataaatttcaaaaagctacacatagctacattg 559
Query: 360 ttttcaaattatagaaactcaaatacatcaaaag-taactggaacggaatgaaagggata 418
|||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |
Sbjct: 560 ttttcaaattatagaaactcaaatacataaaaaaataactggaaaagaatgaaagggaca 619
Query: 419 caaaatgtattcattcagaaacaaataatcaaatcccatttctcctcaggtgccacatat 478
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 caaaatgtattctttcagaaacaa----tcaaatcccatttctcctcaggtgccacatat 675
Query: 479 acaagaaaagagtaaaacacttggttttttaagaaa 514
||||||||||||||||||||||||||||| ||||||
Sbjct: 676 acaagaaaagagtaaaacacttggttttt-aagaaa 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
