BAC Information

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BAC

Clone NameMSMg01-117J12
Chromosome13 (Build37)
Map Location 19,603,312 - 19,603,723
singlet/doubletsinglet
Overlap genenone
Upstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl
Downstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730, Elmo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117J12.T7 (MSMg01no117_j12.b1)MSMg01-117J12.TJ (MSMg01no117_j12.g1)
ACCAG328685AG328686
length694698
length of high quality
(start - end)
585 (65 - 649)526 (77 - 602)
definitionCHROMAT_FILE: MSMg01no117_j12.b1 PHD_FILE: MSMg01no117_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:12 2005CHROMAT_FILE: MSMg01no117_j12.g1 PHD_FILE: MSMg01no117_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAA
TTCAAACACTGCCCCTACCTTGGACTAGGCTGGTGAACGGACTCACTCAC
TCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTC
ACTAGTCAAAGGCATTCACATAACAACAATTATCGCTTCCTAGACTTCAG
CTCCCTCCTTGTTAAGCCTTGTTGGTGTGTTTTAAGCTTTTTAAATATAT
GTATAGGTGTTCTGTCTGCATACGACTGTGAAATACATACATTCTTGAAC
ATAGGTCTCCAGACTGGATATACGGACGATAGTGAGCTCTTATATGGGTG
CTGGGAATTGAATCCAATAATCTGGAATGTCAGTCAGTGTTCTTAGCCAC
TGAAGCATCTCTCCAGCCCCACTGTGTATATATTCTTAAGTATACATTTA
ATCTAGATGGCACAGGTTGAAATAGGCACAGTAATGATTCCTTTTTTTTC
AAGATTTATTTATTTTATGTATCTGAGTACACTATTGCTCTCTTCAGACA
CACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCATCATG
CGGTTGCTGAGAATTGAACTCAGGACCTCTGGAAGAGCCGTCAGTGCACT
TAACCACTGAGCCACCTCTCCAGTCCCACAGTAATGATTCCTAA
NCCACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTGATACTCACCTCCCATTTC
TAGGTTTCATAATTTGTCTCATGCAGGTTATGTGTCAATTTTGATAAACT
GATTCTAGTAATCCAAAAGAATAAAACTAAGTCATTACTAAAAGGATTCT
ATTTTCCTACATCAGTCAACAGAGTTAATTAATTTTCAATAAAATGCCCA
GATGTATGTAGGGAGAATGTGGTTAAAAGTTCTTGAATCTAGATTCTGAA
GGCTCCGGTTCAAGTCGTTTGTAGCATAACTTGGATAAGGGACAGTTTGT
TTTGTTTTTATTTGAAAATACATCTCTACATTTCATTACTCAATCTTGAA
ATCTCCAAGAAGCAATCAGCATGTTCCTAGAACTGCTCTTGAGACGCCTG
GAACAATCAATAGCTTCATTAAGTAAAATAAAAATGTCTGAATTCCATAA
CTGGTAAGGAAGAAAGGGATCAAAAAGTTCAGAGAATTAGGCATTCCAGA
GTGGATATTCTGGGGAAGGCTGGGCTATAGCTATCAGTTAAAAACCTATA
CTCAAAAGAAGAGTTGCATAGGCACTCATTGCATCAGAATAATGGATTAT
CATGAAATATGTTCCAGCATCACTGAGAGTCTTGATTTTCTAAGACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_j12.g1 MSMg01no117_j12.g1 CHROMAT_FILE:
MSMg01no117_j12.g1 PHD_FILE: MSMg01no117_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:12 2005
         (526 letters)



>mm_chr13_19603312_19604237
          Length = 926

 Score =  719 bits (372), Expect = 0.0
 Identities = 402/412 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtgatactcacctcccatttctaggtttcataatttgtctcatgcaggttatgtgtc 60
           ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 412 tctgtgatactcaactcacatttctagatttcataatttgtctcatgcaggttatgtgtc 353

                                                                       
Query: 61  aattttgataaactgattctagtaatccaaaagaataaaactaagtcattactaaaagga 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agttttgataaactgattctagtaatccaaaagaataaaactaagtcattactaaaagga 293

                                                                       
Query: 121 ttctattttcctacatcagtcaacagagttaattaattttcaataaaatgcccagatgta 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 292 ttctattttcctacatcagtcaacagagttaatcaattttcaataaaatgcccagatata 233

                                                                       
Query: 181 tgtagggagaatgtggttaaaagttcttgaatctagattctgaaggctccggttcaagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tgtagggagaatgtggttaaaagttcttgaatctagattctgaaggctccggttcaagtc 173

                                                                       
Query: 241 gtttgtagcataacttggataagggacagtttgttttgtttttatttgaaaatacatctc 300
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 172 gtttggagcataacttggataagggacagtttgttttgttttcatttgaaaatacatctc 113

                                                                       
Query: 301 tacatttcattactcaatcttgaaatctccaagaagcaatcagcatgttcctagaactgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 112 tacatttcattactcaatcttgaaatctccaagaagcaatcagcatgtttctagaactgc 53

                                                               
Query: 361 tcttgagacgcctggaacaatcaatagcttcattaagtaaaataaaaatgtc 412
           |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  tcttgatacgcctggaacaatcaatagcttcattaagtaaaataaaaatgtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)